Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq268 185 1e-41 seq171 86.0 7e-12 >seq268 Length=30626 Score = 185 bits (204), Expect = 1e-41 Identities = 398/589 (68%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTC----CCGCGAGTCCGCGAGACA 19171 ||||||| || || || |||||||| || || ||| | | || | || |||| Sbjct 27200 TCATGCGTGTGGCTGTTGGCATCCACGGAGAGGACATTGAAGCTGCCATTC----AGACT 27255 Query 19172 TACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGG 19230 ||| || ||| |||| || | ||||||||| || |||| ||||||||||| || || Sbjct 27256 TACAACTACATGT-CCAGCAAATACTTCACGCATGCTTCGCCTACCCTTTTCAATGCAGG 27314 Query 19231 TACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGA 19290 || | ||||| | || ||| || || || | |||||||| ||||||||||| Sbjct 27315 CACACCTCAACCGCAACTTTCCTCCTGCTTTCTTGTTGACATGAAGGAGGACAGCATTGA 27374 Query 19291 GGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||| |||||||| || ||||| || || ||||| ||| | || || || || Sbjct 27375 GGGTATCTACGACACTCTCAAAACTTGTGCTATGATCTCAAAGACCGCTGGCGGCATTGG 27434 Query 19351 GATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 || || ||| | ||||| | | ||| || || || || ||||| | Sbjct 27435 TCTCAACGTGCACCGC-ATCCGAGCCACTGGATCATACATTGGAGGAACAAACGGCACAT 27493 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 || | || | || || |||||||| || ||| | || || | ||||| |||||| Sbjct 27494 CCAATGGACTAGTTCCTATGCTCCGTGTTTTCGATGCGACTGCTCGCTACGTTGACCAGG 27553 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | || ||| || || ||||||| ||||| || ||||||||||| || ||| || Sbjct 27554 GTGGAAACAAGCGTCCTGGTGCGTTCGCAATCTATCTGGAGCCATGGCATGCCGACATCT 27613 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCT 19589 | | | | || ||| | |||||| ||| | || ||| ||| ||| || || | Sbjct 27614 TCAACTGGTTGGACCTGAGAAAGAACCACGGTAAAGAAGAGGCGCGTGCTCGTGATCTTT 27673 Query 19590 TCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGC 19649 || |||||||||||||| ||||| |||||| || ||||| || ||| |||||| Sbjct 27674 TCTACGCCTTGTGGATTCCAGACCTGTTCATGAAGCGTGTTGAACAGAACGCCGAATGGA 27733 Query 19650 ACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 ||||||||||| ||||| ||||||||||| |||| || || ||||| Sbjct 27734 CGCTGATGTGCCCTCACGAGTGCCCTGGCCTTGCCGAAGTATATGGCGA 27782 Score = 181 bits (200), Expect = 1e-40 Identities = 392/584 (67%), Gaps = 2/584 (0%) Strand=Plus/Minus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || ||||| || |||| ||||| ||||||||||| ||||||||||| ||| || || Sbjct 27782 TCGCCATATACTTCGGCAAGGCCAGGGCACTCGTGAGGGCACATCAGCGTCCATTCGGCG 27723 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | || ||||| || |||||| ||||| || ||||||| ||| ||| || || || Sbjct 27722 TTCTGTTCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGA 27663 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 |||| ||| || | || |||||| | ||| || | ||| | ||||||||| Sbjct 27662 GCACGCGCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCA 27603 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| |||||||||||||| ||||||| ||| |||||| || ||||||| ||| Sbjct 27602 TGCCATGGCTCCAGATAGATTGCGAACGCACCAGGACGCTTGTTTCCACCCTGGTCAACG 27543 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 || || || || | |||||| |||||||| || || | || | || |||||| Sbjct 27542 TAGCGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTT 27483 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCC 79664 || || || || || | || || ||| | ||| || || || ||||| || Sbjct 27482 GTTCCTCCAATGTATGATCCAGTGGCTCGGATG-CGGTGCACGTTGAGACCAATGCCGCC 27424 Query 79665 GGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTC 79724 | ||| ||||| || || ||||| || |||||||| ||||| || ||| Sbjct 27423 AGCGGTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTC 27364 Query 79725 GTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAA 79784 |||||||| | || || |||||| || | || || | || || || ||||| Sbjct 27363 CTCCTTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAA 27304 Query 79785 GAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC 79844 ||||| |||| || ||||||||| | || | ||| | ||| |||| || | Sbjct 27303 AAGGGTAGGCGAAGCATGCGTGAAGTATTTGCTGGACATGTAGTTGTAAGTCTGAATGGC 27244 Query 79845 GCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 | ||| || ||||||||||| || || || ||||||| Sbjct 27243 AGCTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGA 27200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/171 (72%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 79039 AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACC 79098 || ||||| || || ||||||| |||||| || || ||| || || ||| | Sbjct 28095 AAGGTCGGAAGTGCCATAGATGCCAAGTTGCATACAGCAACCTCATCTGGTGCAGAGTAC 28036 Query 79099 TCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 || ||||| || |||||||||||||| ||| ||||| || | |||||||||||| Sbjct 28035 TCAATGATCTCGGTGCACAAATTAGAGCTGCGA----ATGGTTCCCAGGTTCTTCTGGTT 27980 Query 79155 GCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||||| || |||||||| |||||| |||| | || | || ||||| Sbjct 27979 GCTCTTCCGATTGCAGGCGTCTTTGTAGAGCATGAAAGGATTGCCAGTCTC 27929 >seq171 Length=70297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| ||||| ||| ||| | ||| | |||||||||||||| || ||||| Sbjct 54855 GTCGAAGGCATCTTTTTCAGTGGTGCTTTCGCATCCATTTTCTGGCTCAAGAAACGTGGT 54796 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||||||| ||| ||| || ||||||||||| || || || |||||||| Sbjct 54795 CTCATGCCCGGCTTGACCTTTTCCAACGAGCTCATCTCTCGCGACGAGGG 54746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521063174800