Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq268 150 2e-31 seq18 145 9e-30 seq13 104 3e-17 seq16 98.7 1e-15 >seq268 Length=30626 Score = 150 bits (166), Expect = 2e-31 Identities = 383/575 (67%), Gaps = 11/575 (2%) Strand=Plus/Minus Query 81175 AGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC 81234 ||| | |||||||||| |||||||||||| ||| |||| || | || ||| |||| Sbjct 27764 AGGCCAGGGCACTCGTGAGGGCACATCAGCGTCCATTCGGCGTTCTGTTCAACACGCTTC 27705 Query 81235 ATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATC 81293 ||||| ||| || ||||| | |||| ||| || || || ||| |||||||| || | Sbjct 27704 ATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCA-CGCGCCTCTTCTTT 27646 Query 81294 ACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 ||| ||||| | || || | ||| | |||||| |||||||||||||||||||| Sbjct 27645 ACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCATGGCTCCAGATA 27586 Query 81354 CACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTT 81410 | |||| || || || | |||||||||| ||||| || |||||||| | Sbjct 27585 GATTGCGAACGCACCAGGACGCTTGTTTCCACCCTGGTCAACGTAGCGAGCAGTCGCATC 27526 Query 81411 AAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGA 81470 || ||||| | |||||| | | |||| || ||||| || || | || || Sbjct 27525 GAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTTGTTCCTCCAATGTATGA 27466 Query 81471 CCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATC 81528 || |||| || | | ||| ||| ||||| ||||| || | |||||| ||| Sbjct 27465 TCCAGTGGCTCGGATGCGGTGCACGTTG--AGACCAATGCCGCCAGCGGTCTTTGAGATC 27408 Query 81529 TGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGC 81588 |||||| || | || || || || ||||| ||||| || | |||||||||| | Sbjct 27407 ATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAA-C 27349 Query 81589 AAGAAA-CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC 81647 |||||| ||| || | || || || ||| |||||||| || || || | || Sbjct 27348 AAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAAAAGGGTAGGCGAAGC 27289 Query 81648 GTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTC 81707 || |||| || | | ||||| || || || | || | | ||| || || Sbjct 27288 ATGCGTGAAGTATTTGCTGGACATGTAGTTGTAAGTCTGAATGGCAGCTTCAATGTCCTC 27229 Query 81708 ACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 ||||| || || | ||| |||||||| | ||||| Sbjct 27228 TCCGTGGATGCCAACAGCCACACGCATGATCATGT 27194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 ||||| | |||||| || || |||| ||||| || || ||||| || | | | Sbjct 28098 ACAAAGGTCGGAAGTGCCATAGATGCCAAGTTGCATACAGCAACCTCATCTGGTGCAGAG 28039 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||| | ||| || |||||||||||||| ||| || |||||||| |||||||| Sbjct 28038 TACTCAATGATCTCGGTGCACAAATTAGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTG 27979 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 ||| ||||| ||||| |||||| |||| | || | || |||||| ||| | | Sbjct 27978 CTCTTCCGATTGCAGGCGTCTTTGTAGAGCATGAAAGGATTGCCAGTCTCGGTCTG-GGC 27920 Query 81067 TTG-AGGATGGCGTCCCAAA 81085 ||| || ||||| | ||||| Sbjct 27919 TTGTAGAATGGCATACCAAA 27900 >seq18 Length=328773 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||||||||| | || | ||| | ||| ||||| | Sbjct 243958 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGACC 244017 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| ||||| || || |||||||||||| | || || || || || Sbjct 244018 AAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCAAA 244077 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||||||||| || || Sbjct 244078 CAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCACACTCCAC 244137 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 244138 CTTGTCCTCCGCCTTCGTGGTGG 244160 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| ||||| | ||||| ||||| Sbjct 244162 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCG 244221 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || |||||||| Sbjct 244222 GACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAA 244281 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||| | ||| || | | ||||| || Sbjct 244282 CAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACATTGTCCGACTACAAC 244341 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | ||||| |||||||| Sbjct 244342 ATCCAGAAGGAGTCCACGCTGCACTTGGTTCTACGTCTCCGCGGTGG 244388 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||||||||| ||||| || || ||||| || Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | ||||| |||||||||||||| ||||| |||||||| Sbjct 244450 GATACGATCGACAACGTCAAGACGAAAATCCAGGACAAGGAGGGTATTCCACCAGACCAA 244509 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || |||||| | || |||| ||||| | ||| || || || Sbjct 244510 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACGTTGAGC-GATTACAA 244568 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | || | || | |||||||| || || Sbjct 244569 CATTCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGG 244616 >seq13 Length=375566 Score = 104 bits (114), Expect = 3e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| || ||||||||||||||||| || | ||| Sbjct 314853 TTCGTCAAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCATC 314912 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | || | || || || ||||| || |||||||| ||||| || ||||| | Sbjct 314913 GATAATGTCAAAACCAAGATACAAGACAAAGAAGGAATTCCACCAGATCAACAGCGGTTG 314972 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || |||||| | ||||||| || || | ||| ||||| || |||| || Sbjct 314973 ATCTTCGCCGGGAAGCAATTAGAGGATGGACGCACTTTGAGC-GACTACAACATCCAGAA 315031 Query 27594 GGAATC 27599 || ||| Sbjct 315032 GGTATC 315037 >seq16 Length=359911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || ||||||||||||||||| || | || || || || ||||| |||||| Sbjct 61215 GACAAGGAAGGGATTCCTCCAGACCAGCAACGCTTGATCTTCGCAGGAAAGCAGCTCGAG 61156 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || ||| | ||||| || |||||||||| || ||||| || || || | Sbjct 61155 GACGGCCGCACTCTATCCGACTACAACATCCAAAAGGAGTCGACTCTCCACCTCGTTCTC 61096 Query 27619 CGTCTTCGCGGTGG 27632 || ||||| || || Sbjct 61095 CGACTTCGTGGCGG 61082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306514760400