Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq13 93.3 4e-14 >seq18 Length=328773 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||||||| | ||||| || ||||| ||| | ||| Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| ||||| || ||||| || || || ||||| || ||| Sbjct 244450 GATACGATCGACAACGTCAAGACGAAAATCCAGGACAAGGAGGGTATTCCACCAGACCAA 244509 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| | || | |||||| || ||||||||||| | || |||| ||||||||| Sbjct 244510 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGA-TGGACGTACGTTGAGCGATTACAA 244568 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 |||||| |||||||||||||| || ||||| | ||| | || || |||| Sbjct 244569 CATTCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGGCA 244618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | || || || || || || | |||| | || || | || || Sbjct 243956 TGACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGA 244015 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||||||||| ||||| || ||||| || || |||||||| || | |||||||| Sbjct 244016 CCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCA 244075 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 |||| | || ||| | ||| | || || |||||||| || ||||| || || Sbjct 244076 AACAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCAC 244130 >seq13 Length=375566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || || ||| | || |||||||| || || | || ||| | || Sbjct 314853 TTCGTCAAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCATC 314912 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | |||||| || || |||||||||||||| || ||||| ||||||||||| || Sbjct 314913 GATAATGTCAAAACCAAGATACAAGACAAAGAAGGAATTCCACCAGATCAACAGCGGTTG 314972 Query 27117 ATATACGCCGGCAAACAATTGGAAGA 27142 || | |||||| || ||||| || || Sbjct 314973 ATCTTCGCCGGGAAGCAATTAGAGGA 314998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915437118400