Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18 150 4e-31 seq13 123 6e-23 seq16 116 9e-21 >seq18 Length=328773 Score = 150 bits (166), Expect = 4e-31 Identities = 171/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| | || ||||| || || ||||| ||||| | ||| | Sbjct 244611 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTCAACG- 244553 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||||||||| ||||| || |||||||| ||||| |||||||| || |||| | Sbjct 244552 TACGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGAATAC 244493 Query 211012 CTTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 | |||||||||||||| ||| || || ||||| ||||| || || || |||||| ||| Sbjct 244492 CCTCCTTGTCCTGGAT-TTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACTTCG 244434 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || ||||||||||| || || | ||||| Sbjct 244433 AGCGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| || ||||| || || |||||||| || |||| ||||| Sbjct 244155 ACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGT 244096 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||| ||||| |||||||| | || || ||||| || || | ||| Sbjct 244095 TCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCC 244036 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| ||||| || ||||||||||| | ||||||||||| Sbjct 244035 TTCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTCGCTGGACTCAACCTCGAG 243976 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 243975 GGTGATGGTCTTGCCAGT 243958 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| || |||||||| || |||||||| || || | | || Sbjct 244382 CGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTG 244323 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| || || || ||||| |||||||| || || | || Sbjct 244322 CGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGGATGCCC 244263 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| ||| || ||||| | Sbjct 244262 TCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAG 244203 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| | ||||| || || | |||||| Sbjct 244202 GTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 >seq13 Length=375566 Score = 123 bits (136), Expect = 6e-23 Identities = 137/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 || |||||||| || || | ||| | | | |||||| || | ||||| || |||||||| Sbjct 315031 TTCTGGATGTTGTAGTCGCTCAAAG-TGCGTCCATCCTCTAATTGCTTCCCGGCGAAGAT 314973 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | || ||||| || || |||| |||||| ||||| || ||||| ||| || || || Sbjct 314972 CAACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATC 314913 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||||||| ||| |||||||| ||||| || ||||||||||| || ||||| || || Sbjct 314912 GATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAA 314853 >seq16 Length=359911 Score = 116 bits (128), Expect = 9e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || ||||| ||||| ||||| ||||||||||| || || | || || Sbjct 61087 ACGAAGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGATAGAGT 61146 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| ||||||||||| | |||||| ||||| ||||||| || Sbjct 61147 GCGGCCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGAATCCC 61206 Query 211013 TTCCTTGTC 211021 ||||||||| Sbjct 61207 TTCCTTGTC 61215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143905858925