Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13 122 6e-23 seq18 114 9e-21 >seq13 Length=375566 Score = 122 bits (134), Expect = 6e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 |||||| || ||||| |||||||| || || ||||| || ||||| ||| | ||||| | Sbjct 314852 TTTCGTCAAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCAT 314911 Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 || ||| | ||||| || | | ||||||||||| | || |||||||||||||| | Sbjct 314912 CGATAATGTCAAAACCAAGA-TACAAGACAAAGAAGGAATTCCACCAGATCAACAGCGGT 314970 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 | || || ||||| || ||| | || || | ||||||||| |||| |||||||| || | Sbjct 314971 TGATCTTCGCCGGGAAGCAATTAGAGGATGGACGCACTTTGAGCGACTACAACATCCAGA 315030 Query 23798 A 23798 | Sbjct 315031 A 315031 >seq18 Length=328773 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || || || || || ||||||||||| || | Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || | || || |||| | ||||| || ||| | || ||||| || Sbjct 244450 GATACGATCGACAACGTCAAGACGAAAA-TCCAGGACAAGGAGGGTATTCCACCAGACCA 244508 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || ||| ||||||| | ||| || || |||||||||| Sbjct 244509 ACAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACGTTGAGCGATTACAA 244568 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || || || || || Sbjct 244569 CATTCAGAAGGAGTCGACCTTGCACTTGGT 244598 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || || || | || || || ||| || Sbjct 244162 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCG 244221 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| || || | || ||||| || Sbjct 244222 GACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGCATCCCACCAGACCA 244280 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || |||| ||||| || ||| ||||| Sbjct 244281 ACAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACATTGTCCGACTACAA 244340 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||| || || |||||||| | || || ||| || Sbjct 244341 CATCCAGAAGGAGTCCACGCTGCACTTGGTTCTA 244374 Score = 84.2 bits (92), Expect = 1e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || ||||| ||||| ||||| |||| ||||| | || ||| | || || Sbjct 243958 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGACC 244017 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | || ||||| ||||| | || || || || |||||||| || || |||||||| Sbjct 244018 AAGA-TTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCAA 244076 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 ||| || || |||| || || | || |||||||| || || || |||||| Sbjct 244077 ACAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCACA 244131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007354876860