Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 159 7e-34 seq13 134 3e-26 seq171 102 2e-16 seq16 93.3 9e-14 >seq18 Length=328773 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||| || | |||| || || |||||||||||||| | Sbjct 244389 ACCACCGCGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGA 244330 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || ||||| || || || |||||||| |||| || |||||||| || Sbjct 244329 CAATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGG 244270 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | || || Sbjct 244269 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 244210 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || |||||||||||||| ||||| ||||| |||||||| Sbjct 244209 CTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| ||| || |||||||||||||| | Sbjct 244161 ACCACCACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGA 244102 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 244101 GAGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 244042 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||||| | || || | ||||| ||||| | || || Sbjct 244041 GATTCCTTCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTCGCTGGACTCAAC 243982 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| || |||| Sbjct 243981 CTCGAGGGTGATGGTCTTGCCAGTCA 243956 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || || || || || || |||||||| || Sbjct 244616 CCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTC 244557 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || ||||| || | ||| || ||||| ||||| | || |||||||| ||| Sbjct 244556 AACGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGA 244497 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| ||||| || | || ||| | ||||| || || |||| ||| ||| Sbjct 244496 ATACCCTCCTTGTCCTGGATTTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACT 244437 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 244436 TCGAGCGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 >seq13 Length=375566 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||| |||||||||| ||| |||||||| |||||| Sbjct 315031 TTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGATC 314972 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || ||||| || ||||| || || |||||||| ||||| | ||| || ||||| Sbjct 314971 AACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATCG 314912 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || ||||| || ||||| ||||| | ||||| ||||| Sbjct 314911 ATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAA 314853 >seq171 Length=70297 Score = 102 bits (112), Expect = 2e-16 Identities = 169/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | |||| || ||| | || ||| | |||| || | || ||| | Sbjct 54672 ATCATCACGGAGGCAGTTCAAATTGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGA 54613 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | ||||| || || || || ||||||||| | Sbjct 54612 CTGCTCGGCATGAATTCAGGGCTCATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTC 54553 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || | || || || | | || || ||||| | ||| ||||||| || |||||| Sbjct 54552 TTGCTTGCACTCGGCAATGTCAAGGTCTATAATGCTGTGAATCCCTTCGACTTCATGGAG 54493 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-AAG 230401 ||| || ||| || || || || |||||||| || |||||| | ||||| || ||| Sbjct 54492 AACATCTCTCTCGCCGGAAAGACAAATTTCTTCGAGAAACGTGTCGGTGATTACCAGAAG 54433 Query 230402 GCC 230404 ||| Sbjct 54432 GCC 54430 >seq16 Length=359911 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | || || ||||||||||||||||| | Sbjct 61081 ACCGCCACGAAGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGA 61140 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || |||||||| ||||| ||||| || Sbjct 61141 TAGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGG 61200 Query 282992 AATACCCTCCTTGTCT 283007 ||| || ||||||||| Sbjct 61201 AATCCCTTCCTTGTCT 61216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731890816430