Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 140 8e-28 seq13 120 7e-22 seq16 95.1 3e-14 >seq18 Length=328773 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || | ||||||||||| || || || Sbjct 243958 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGACC 244017 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||||||||| ||||||||||| || | ||||||||||| ||| Sbjct 244018 AAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCAAA 244077 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || | || || ||| |||| || ||||| ||||| || Sbjct 244078 CAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCACACTCCAC 244137 Query 178125 CTTGT 178129 ||||| Sbjct 244138 CTTGT 244142 Score = 127 bits (140), Expect = 5e-24 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || || || ||||| || ||| || || Sbjct 244393 CAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCCGAT 244452 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| |||||||| || ||| || |||||||| || || || || || ||||| || Sbjct 244453 ACGATCGACAACGTCAAGACGAAA-ATCCAGGACAAGGAGGGTATTCCACCAGACCAACA 244511 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || |||||||||||||| || | ||||||||| | || | |||||| ||| | Sbjct 244512 GCGCCTCATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACGTTGAGCGATTACAACAT 244571 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 244572 TCAGAAGGAGTCGACCTTGCA-CTTG 244596 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || ||| | |||||||| ||| ||| Sbjct 244165 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCGGAC 244224 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || ||||| || Sbjct 244225 ACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAACAG 244284 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || |||||||| || || | || | |||| || ||| || Sbjct 244285 CGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACATTGTCCGACTACAACATC 244344 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || ||||| |||| || Sbjct 244345 CAGAAGGAGTCCACGCTGCA-CTTGGTT 244371 >seq13 Length=375566 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || ||||| || || || || ||||| || |||||||||||| Sbjct 314852 TTTCGTCAAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCAT 314911 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || |||||| ||||| || |||||||||||||| || || || || || || | Sbjct 314912 CGATAATGTCAAAACCAAGATACAAGACAAAGAAGGAATTCCACCAGATCAACAGCGGTT 314971 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || | || |||||| | ||| | ||| || ||| |||| || Sbjct 314972 GATCTTCGCCGGGAAGCAATTAGAGGATGGACGCACTTTGAGCGACTACAACATCCAGAA 315031 Query 178109 AGAATC 178114 | ||| Sbjct 315032 GGTATC 315037 >seq16 Length=359911 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| || ||||| ||||||||||| | |||||||| ||||| |||||||| Sbjct 61215 GACAAGGAAGGGATTCCTCCAGACCAGCAACGCTTGATCTTCGCAGGAAAGCAGCTCGAG 61156 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | ||||| |||| || ||| ||||||| || || || || || || ||| | Sbjct 61155 GACGGCCGCACTCTATCCGACTACAACATCCAAAAGGAGTCGACTCTCCACCTCGTTCTC 61096 Query 178134 AGACT 178138 |||| Sbjct 61095 CGACT 61091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722794570730