Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18 174 1e-38 seq16 89.7 5e-13 >seq18 Length=328773 Score = 174 bits (192), Expect = 1e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||| |||| ||||||||| ||||||||| ||||| |||||||| Sbjct 244388 CCACCGCGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 244329 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| ||||||||||||||||| || ||||||||||||||||| | || Sbjct 244328 AATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGG 244269 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| |||||||| Sbjct 244268 ATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCGATGGTGTCCGAGGACTCCAC 244210 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || |||||||||| ||||| ||||| |||||||| Sbjct 244209 CTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| |||| || ||||||||||||||| || ||| Sbjct 244617 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCT 244558 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || | ||||| |||||||| || |||||||||||||| | || Sbjct 244557 CAACGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGG 244498 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| |||||| ||| ||| | | | || ||| || || | Sbjct 244497 AATACCCTCCTTGTCCTGGATTTTCGTCTT-GACGTTGTCGATCGTATCGGAAGATTCAA 244439 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| || || || || || || ||||| |||||||| ||||| Sbjct 244438 CTTCGAGCGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 102 bits (112), Expect = 8e-17 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| |||||||| ||||| ||||| ||| Sbjct 244160 CCACCACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAG 244101 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||| ||||||||||| |||| ||||| ||||||| || Sbjct 244100 AGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 244041 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||||| | ||| | || | |||| || | | | |||||||| ||||| | Sbjct 244040 ATTCCTTCCTTGT-CTTGAATCTTGGTCTTC-ACATTGTCGATGGTGTCGCTGGACTCAA 243983 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCA 41840 |||| | || || || || || |||| Sbjct 243982 CCTCGAGGGTGATGGTCTTGCCAGTCA 243956 >seq16 Length=359911 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || || || || || |||||| || ||||| |||||||| Sbjct 61082 CCGCCACGAAGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAT 61141 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| || ||||| |||| ||| || ||||| | ||| Sbjct 61142 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGA 61201 Query 41756 ACGCTCTCCTTGTC 41769 | | |||||||| Sbjct 61202 ATCCCTTCCTTGTC 61215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300850554000