Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq721 152 5e-32 seq347 132 5e-26 seq249 93.3 4e-14 seq825 87.8 2e-12 >seq721 Length=773014 Score = 152 bits (168), Expect = 5e-32 Identities = 204/283 (72%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||||||||||||| ||||| ||| || || ||||||| ||| ||| | || || Sbjct 708447 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 708388 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| |||||| | ||| |||||||| |||| ||| ||||||| Sbjct 708387 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 708328 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || |||||||| || || ||||||||||||||||| || |||| ||| Sbjct 708327 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACGT 708268 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | || || ||||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 708267 TTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCATG 708208 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915 || ||| | || || || | || || ||| ||||| |||| Sbjct 708207 GAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 708165 Score = 114 bits (126), Expect = 1e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 ||| || || || ||||| || |||||||| ||||||| ||| || || | || Sbjct 707991 GCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTAT 707932 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 || ||||||||||| ||||| |||||||||||| |||| ||| |||||| |||||||| Sbjct 707931 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTCATCTC 707872 Query 117157 CAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||||| |||| |||||||||||| Sbjct 707871 TCGCGACGAGGGAATGCACACCGACTTTGCCTG 707839 >seq347 Length=198302 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| ||||||||| | || || || | | Sbjct 168925 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 168984 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 168985 GACACCATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 169043 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 169044 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACCCTCTCAGACTACAA 169103 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 169104 CATCCAGAAGGAGTCCACACTTCACCTTGT 169133 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || |||| || ||| || | Sbjct 170692 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 170751 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || || || || | |||||| Sbjct 170752 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 170811 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || || |||| |||| || || | | |||||||||| Sbjct 170812 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGCGACTACAAC 170871 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || |||| Sbjct 170872 ATCCAGAAGGAGTCGACCTTGCA 170894 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || |||| || ||| || | Sbjct 180053 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 179994 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || || || || | |||||| Sbjct 179993 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 179934 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || || |||| |||| || || | | |||||||||| Sbjct 179933 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGCGACTACAAC 179874 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || |||| Sbjct 179873 ATCCAGAAGGAGTCGACCTTGCA 179851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || || || | | ||||| | | | |||| ||||| Sbjct 170488 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACG-TCAAGAC 170546 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||||||||| | |||||||| || | |||| ||| ||||| Sbjct 170547 CAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 170606 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | |||||| | |||||||||||||||||||| |||| || || Sbjct 170607 GCAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATCCAGAAGGAATCCACTCTCCA 170666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || || || | | ||||| | | | |||| ||||| Sbjct 180257 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACG-TCAAGAC 180199 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||| ||||| | |||||||| || | |||| ||| ||||| Sbjct 180198 CAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 180139 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | |||||| | |||||||||||||||||||| |||| || || Sbjct 180138 GCAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATCCAGAAGGAATCCACTCTCCA 180079 >seq249 Length=210267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| ||||| ||||||||||| ||||||||| | || ||||| || | |||| | Sbjct 84298 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 84239 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || | ||||| || ||| | Sbjct 84238 GACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTA 84179 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || || |||| || | || ||| | | ||||||||||||||| ||| Sbjct 84178 ATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAAAG 84119 Query 40879 G 40879 | Sbjct 84118 G 84118 >seq825 Length=464296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || |||||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 424428 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 424369 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||| ||||||||||||||||||||| | || || || || || Sbjct 424368 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 424313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212682477120