Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq400 253 2e-62 seq721 123 2e-23 seq347 113 4e-20 >seq400 Length=377941 Score = 253 bits (280), Expect = 2e-62 Identities = 634/951 (67%), Gaps = 18/951 (2%) Strand=Plus/Plus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 ||||| | ||| | || || || ||| ||||||| ||||| || || || | | Sbjct 294240 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 294299 Query 23309 ATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 || ||||||||| |||| | | | || | ||| ||||| |||| || || || | Sbjct 294300 TGAGGGCACATGAGAGTCCAG-TCGCCATTC-TGTTCGACGCGCTTCATGAACAGGTCGG 294357 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | ||||| | || ||||| || || || || ||| | || ||||||||| ||||||| Sbjct 294358 GAATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTC 294417 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 ||| ||| || ||| || || || || ||||| ||||||||||| | ||| || || | Sbjct 294418 TCAGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCAC 294477 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 | || | ||| ||||| || ||||| ||||| || || || || | || | |||| Sbjct 294478 CAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCA 294537 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 | || || |||||||| || | |||| | || | | || || | ||||| | Sbjct 294538 TAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGA 294597 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 | || | || | || || || || | | || || ||||| || || || | Sbjct 294598 TGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGA 294657 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 | ||||||||||| ||||||||||||||||| || || | | | ||| || || || | Sbjct 294658 GGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGA 294717 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 ||||| || || || | || ||| ||||| ||| ||||||||| |||||| | Sbjct 294718 GTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGT 294777 Query 23787 TCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATG 23845 | ||||| ||| ||||| || | ||||| | ||||||||||||||||| || |||| Sbjct 294778 TAGACATGTAG-TTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACT 294836 Query 23846 GCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAAC 23902 || || ||||| ||||| | ||| || | || ||||| | |||| | ||| || Sbjct 294837 GCCACACGCATGATCATATGTTGTGGACGCTCAGCGACCTT---GCCGCTTATTCGGAGT 294893 Query 23903 AGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGC 23962 || ||||| || | || || || || ||||| || | || || || || | |||| Sbjct 294894 AGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTAT 294953 Query 23963 ACTATGGCCGAATTCAAACGGTACGCATTGGCAGC--GATGATGTTGTAATGAAAATTCG 24020 || ||||| || ||||| | ||||| || | || | | ||||| | | || Sbjct 294954 ACAATGGCAGAGTTCAACTCATCCGCAT--GCTTCATGACGGTCTTGTATGTGATGTCCG 295011 Query 24021 ATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATAATGA 24080 | ||||| || ||| | | ||||||| | ||| || || | || |||| Sbjct 295012 AAATCATAGGGCATTTCTTGTTGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGA 295071 Query 24081 CATC-GAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCA 24139 || | || || | || || || | |||||| | ||| || ||||| | | || ||| Sbjct 295072 CAGCAGAGAACTGCTTC-TTGGTTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCA 295130 Query 24140 AGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCG 24190 || | | ||||||| ||| || ||||||| |||||| ||||| ||| Sbjct 295131 AGGATTGCGTAGTCGGGATGTGTGACGGTCATGTACGCTGCTGTCTCAGCG 295181 >seq721 Length=773014 Score = 123 bits (136), Expect = 2e-23 Identities = 282/419 (67%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| || ||||| ||||| ||||| ||| |||||| | || || ||| Sbjct 707983 TCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTCTGGC 707924 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| ||||| || ||||||||| |||| || |||||| | || || ||||||| Sbjct 707923 TCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTCATCTCTCGCGACG 707864 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| | || || || ||||| ||||| | | ||| || | ||| || || ||| Sbjct 707863 AGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCTCAACAAGAAGCCTTCGC 707804 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 || | || | ||| ||||||||||| || || || | || || | | || Sbjct 707803 CTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGCAGGAATTCTTGAGCG 707744 Query 58219 AAGCCCTACCGGTGGCCA-TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 |||| |||| || | ||||||| |||||| | | |||| ||||||| ||| Sbjct 707743 AAGCATTACC-ATGCAGATTGCTCGGCATGAACTCTACCCTCATGTGCCAGTACATCGAG 707685 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT---GATTGGAGAGCGTCATTACAACACGAAA 58334 |||||||| || | || ||||| | || | || || || ||||||| | Sbjct 707684 TTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAATGTTAAG-GT--TTACAACGCCGTC 707628 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || || ||| | ||||| |||| || ||||| ||||||||||| || Sbjct 707627 AACCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACTAACTTTTTCGAGAA 707569 Score = 107 bits (118), Expect = 2e-18 Identities = 196/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| ||||||||| |||||| || || |||||||||| |||||| | || || Sbjct 708447 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 708388 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || | || ||| | || | || || || | ||| || | Sbjct 708387 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 708328 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || |||||||| ||||| ||||| || || |||||||| | ||||| | Sbjct 708327 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACG- 708269 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| ||| ||||| || || | || || ||||||||||||| |||||| | ||||| Sbjct 708268 TTTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCAT 708209 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGT 57849 |||||| | ||||| || | || || || || ||||| |||| Sbjct 708208 GGAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 708165 >seq347 Length=198302 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || || || |||| |||||| | || Sbjct 170692 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 170751 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 170752 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 170811 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || || ||||||||| || ||||||| || ||| Sbjct 170812 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGCGACTACAAC 170871 Query 31373 ATTCAAAAAGAATCGAC 31389 || || || || ||||| Sbjct 170872 ATCCAGAAGGAGTCGAC 170888 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || || || |||| |||||| | || Sbjct 180053 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 179994 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 179993 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 179934 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || || ||||||||| || ||||||| || ||| Sbjct 179933 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGCGACTACAAC 179874 Query 31373 ATTCAAAAAGAATCGAC 31389 || || || || ||||| Sbjct 179873 ATCCAGAAGGAGTCGAC 179857 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| ||||| || |||||| | || ||||| | || Sbjct 168925 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 168984 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 168985 GACACCATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGCATCCCACCAGACCA 169043 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||| ||||| ||| | || || Sbjct 169044 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGA 169079 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| ||||| || |||||| | || ||||| | || Sbjct 169153 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 169212 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||| || | || || ||||| Sbjct 169213 GACACCATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGAATCCCACCAGACCA 169271 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||| ||||| ||| | || || Sbjct 169272 GCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGA 169307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760761055040