Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq400 107 2e-18 seq721 82.4 1e-10 >seq400 Length=377941 Score = 107 bits (118), Expect = 2e-18 Identities = 463/725 (64%), Gaps = 8/725 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||||||||| || | | || | | | | ||| || || | || ||||| | | Sbjct 294257 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 294316 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 294317 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 294375 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 294376 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 294435 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 294436 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 294495 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | ||||| | ||| | ||| || | | | || | | ||| |||| || |||||| | Sbjct 294496 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 294555 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 || | || || || || || || |||| |||| || || | || || | Sbjct 294556 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 294615 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || | || || || | || || || | ||||| ||||| || | Sbjct 294616 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 294675 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | ||||| || || || ||| || || || || || | ||| | ||| || | Sbjct 294676 CGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 294735 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63725 | || || || | ||||| || |||||||| || |||| | ||| | |||| ||||| Sbjct 294736 CTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAT 294794 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||| || || || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 294795 GTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 294854 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || || | ||| | | ||| | ||||| | | ||| ||| |||| ||| Sbjct 294855 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGAGTC 294914 Query 63846 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || ||||| || | ||| ||||| |||| ||||| | ||| | || || | || Sbjct 294915 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 294972 Query 63904 TATCC 63908 |||| Sbjct 294973 CATCC 294977 Score = 93.3 bits (102), Expect = 5e-14 Identities = 298/459 (65%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 293058 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 293117 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 293118 CCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 293177 Query 62166 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 293178 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 293236 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 || || || |||||||||| || || |||| || ||||| || |||| Sbjct 293237 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCTTTGATATCATCGGGAAT 293296 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 || | | ||||| || || ||||| ||| | || || | |||||| || | || Sbjct 293297 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 293356 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | ||||| | | || | || || ||||| || ||||||||||| || Sbjct 293357 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 293416 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 293417 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 293476 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 | |||||||| || || ||||| |||||||| || || Sbjct 293477 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAGCAAC 293515 >seq721 Length=773014 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || ||||| |||||||| ||||| || ||||| ||||| || |||| || || | || | Sbjct 708191 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 708250 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | ||| ||||| | || || || || || ||||| ||||| Sbjct 708251 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 708310 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 34054 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 708311 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 708369 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 708370 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 708429 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| |||||| Sbjct 708430 CTTGTACATGCGCCAGAT 708447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809632807360