Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq721 129 9e-25 seq971 109 8e-19 seq400 86.0 9e-12 >seq721 Length=773014 Score = 129 bits (142), Expect = 9e-25 Identities = 291/434 (67%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||| || || ||||| |||||||| || ||||| | ||||| Sbjct 707987 CTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTC 707928 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| |||| | ||||| | || ||||| Sbjct 707927 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTCATCTCTCGC 707868 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 |||||||| | ||| ||||||||| || || || || || || | | || Sbjct 707867 GACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCT-----CAACAAGA 707813 Query 125606 GTGCAGATCCAGCG-ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | || || |||| ||| | ||| | ||||| || || || || | Sbjct 707812 ------AGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGC 707759 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | || || | | |||| | |||| ||| || | |||||||||| | || |||| Sbjct 707758 AGGAATTCTTGAGCGAAGCATTACCATGCAGATTGCTCGGCATGAACTCTACCCTCATGT 707699 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGA 125781 || ||||||| |||||||| || |||||||| || | | ||||| ||| Sbjct 707698 GCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTG---CGCTTGGCAATGTTAAGG 707642 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 ||||||||||| || ||||| || |||||| | ||| || || | || ||||| | Sbjct 707641 TTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACTA 707582 Query 125842 ACTTTTTCGAGAAG 125855 |||||||||||||| Sbjct 707581 ACTTTTTCGAGAAG 707568 >seq971 Length=1140195 Score = 109 bits (120), Expect = 8e-19 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || || || || || ||||| ||||| ||| | || | || || |||||| Sbjct 464892 AAGAAGGTGACCTTGGACCGGTCTACGGGTTCCAATGGCGACATTTTGGAGCCGAGTATG 464951 Query 70122 TAGACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 | || ||| || ||||| ||| | ||||| || || |||||| || |||||| |||| || Sbjct 464952 TGGA-TGCAAGGACAGATTATACCGGTCAAGGCGTGGATCAACTGGCAGACA-TCATGGA 465009 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || ||| | | ||| | || | |||||||||||||||| Sbjct 465010 CAAACTGAAGAACAAGCCTTACGATCGCCGAATCATCTTGAGTGCATGGAATCCTGCAGA 465069 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 ||| ||||||| || || || || ||| ||||| |||||||| ||| Sbjct 465070 CTTGACGAAAATGGCCCTCCCCCCTTGCCACATGTTT-GCTCAGTTCTAC 465118 >seq400 Length=377941 Score = 86.0 bits (94), Expect = 9e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||||||||||| | | || || || || |||||| | | | | || | | || Sbjct 294569 AACAAACGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCG 294510 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || ||||| || || || || || | ||| ||||| | || || || Sbjct 294509 CTACGTTGATCAAGGTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATG 294450 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || ||| | || || | || ||| ||| ||||| || || Sbjct 294449 GCACGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG 294390 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || ||||| | ||| | || || ||||||||||||||||| | | Sbjct 294389 TGCTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACA 294330 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||||| || |||||||| || || || ||||| ||||| || || Sbjct 294329 GAATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGG 294270 Query 97106 CGAAGAGTTTGAGGC 97120 || ||||| || || Sbjct 294269 TGACGAGTTCGAAGC 294255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049825601120