Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq347 179 7e-40 seq249 125 1e-23 >seq347 Length=198302 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || || ||| Sbjct 169151 CCACCACGGAGGCGGAGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAG 169092 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| ||||| Sbjct 169091 AGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 169032 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||||| ||| || || Sbjct 169031 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGATGACTCAACC 168972 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| | ||||||||||| || ||||| Sbjct 168971 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 168925 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || ||||| || | |||||||| | || ||||| || |||||||| || Sbjct 170925 TTAGTTGCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTA 170866 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| | || | || ||||| || ||||| |||||||| ||||| | || ||||| Sbjct 170865 GTCGCTCAACGTACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTC 170806 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| ||||||||||| || ||||| | |||||| ||||||||||| | || Sbjct 170805 TGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGA 170746 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | || || || || || ||||||||||| ||||| || ||||| Sbjct 170745 TTCAACTTCGAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 170692 Score = 156 bits (172), Expect = 8e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || ||||| || | |||||||| | || ||||| || |||||||| || Sbjct 179820 TTAGTTGCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTA 179879 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| | || | || ||||| || ||||| |||||||| ||||| | || ||||| Sbjct 179880 GTCGCTCAACGTACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTC 179939 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| ||||||||||| || ||||| | |||||| ||||||||||| | || Sbjct 179940 TGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGA 179999 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | || || || || || ||||||||||| ||||| || ||||| Sbjct 180000 TTCAACTTCGAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 180053 Score = 145 bits (160), Expect = 1e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || | | || ||||| ||||| || || ||| Sbjct 169310 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCC 169251 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| | ||||||| ||||||||||||| ||| || || ||||||||| Sbjct 169250 TTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTG 169191 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| | ||||||||||| || ||||| Sbjct 169190 ATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 169153 Score = 136 bits (150), Expect = 7e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || ||||| || || |||||||| || || || Sbjct 180055 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 180114 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| || | | || ||||| ||||| Sbjct 180115 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 180174 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||||||||| | ||||||| ||||||||||| ||| || || || Sbjct 180175 ATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTAGACTCAAC 180233 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || ||||| || Sbjct 180234 CTCAAGGGTGATCGTCTTTCCGGT 180257 Score = 131 bits (144), Expect = 3e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || ||||| || || |||||||| || || || Sbjct 170690 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 170631 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| || | | || ||||| ||||| Sbjct 170630 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 170571 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | ||||||| ||||||||||| ||| || || || Sbjct 170570 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTAGACTCAAC 170512 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || ||||| || Sbjct 170511 CTCAAGGGTGATCGTCTTTCCGGT 170488 >seq249 Length=210267 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || ||| | || | ||||| || || ||||| || || || || Sbjct 84120 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 84179 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| || ||||| || ||||||||||| ||||| | |||||| ||| Sbjct 84180 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 84239 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||||||||| |||||||| Sbjct 84240 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAA 84298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610741476640