Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq721 120 3e-22 seq347 104 2e-17 seq249 84.2 2e-11 >seq721 Length=773014 Score = 120 bits (132), Expect = 3e-22 Identities = 340/516 (66%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384 || || ||| | ||||| ||||| | |||||| |||||||||| | || |||| | | Sbjct 708062 GTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGAT-GACAACTC 708004 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | || ||| | || || ||||| |||||||| | || || |||| Sbjct 708003 TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGC 707944 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 |||||| | ||||| | | || | | || | ||||||||| |||| ||| ||| Sbjct 707943 CTTTGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAA 707884 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 ||| | || || |||||||| ||| ||||||| |||||||| |||||| || | Sbjct 707883 CGAACTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACA 707824 Query 52565 GCGCGTGACCGAAAAATTGGATTCG---GACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 || | || || || | |||| || | ||| ||| ||| ||||| || Sbjct 707823 GCTCA--AC--AAGAA--GCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGT 707770 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 || || |||| || || | | || | || | |||| ||||||||| | Sbjct 707769 ACAAATTGAGCAGGAATTCTTGAGCGAAGCATTACCATGCAGATTGCTCGGCATGAACTC 707710 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 ||||||| |||||||||||||||| || |||||||| ||| | ||| || | Sbjct 707709 TACCCTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAA 707650 Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 ||| | |||||| ||| || || || || ||| | ||||| || || | || Sbjct 707649 TGTTAAGGTTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGG 707590 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||||||||||||||| ||||| || || Sbjct 707589 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTA 707554 >seq347 Length=198302 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | | |||||||| || |||||||||||||| Sbjct 170919 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCT 170860 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || | ||| || |||| |||| || ||||| ||||| ||||| Sbjct 170859 CAACGTACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 170800 Query 138507 TATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| || | || |||| || | |||||| | || || | Sbjct 170799 AATACCTTCCTTGTCCTGGATCTTCGTCTTGACATTG-TCGATGGTGTCAGAGGATTCAA 170741 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || || || || || || || || ||||| Sbjct 170740 CTTCGAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 170692 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | | |||||||| || |||||||||||||| Sbjct 179826 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCT 179885 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || | ||| || |||| |||| || ||||| ||||| ||||| Sbjct 179886 CAACGTACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 179945 Query 138507 TATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| || | || |||| || | |||||| | || || | Sbjct 179946 AATACCTTCCTTGTCCTGGATCTTCGTCTTGACATTG-TCGATGGTGTCAGAGGATTCAA 180004 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || || || || || || || || ||||| Sbjct 180005 CTTCGAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 180053 >seq249 Length=210267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||||||| ||||| ||||| | ||| || || | | ||| Sbjct 84118 CCTTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGA 84177 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543 ||| ||||||||||| || || || || || ||||| ||| || | || |||| Sbjct 84178 TTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTG- 84236 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||| | ||||| ||||| | || | || || || || || ||||| || Sbjct 84237 TCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACG 84296 Query 138604 AAA 138606 ||| Sbjct 84297 AAA 84299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256122280640