Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq721 104 2e-17 seq347 104 2e-17 seq249 82.4 7e-11 >seq721 Length=773014 Score = 104 bits (114), Expect = 2e-17 Identities = 334/511 (65%), Gaps = 7/511 (1%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| |||||| ||| | || ||| || Sbjct 708059 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 708000 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || ||| | |||| ||||| |||||||| |||||||| ||| |||| Sbjct 707999 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 707940 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | ||||||||| | || || |||||| Sbjct 707939 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 707880 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGA 47309 || ||||| | ||||| || |||||||| |||||||||| ||| || | ||| || Sbjct 707879 CTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCT-CAC-AGC 707822 Query 47310 GTCGATCAAAAG--TTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCA 47367 || | | ||| || | | || ||||| ||| ||| | |||| || || | Sbjct 707821 -TCAACAAGAAGCCTTCGCC-TGAAG-CCGTCCGCGCCATCATCACCGAGGCAGTACAAA 707765 Query 47368 TTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGA 47427 ||||| ||| || || ||| || | || || | || |||||| | Sbjct 707764 TTGAGCAGGAATTCTTGAGCGAAGCATTACCATGCAGATTGCTCGGCATGAACTCTACCC 707705 Query 47428 TGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCA 47487 | ||| | |||||||||| ||||| || || || || | || ||| || | Sbjct 707704 TCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAATGTTA 707645 Query 47488 AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 || ||||| || ||| || || ||||| || ||| | ||||| || |||| || |||| Sbjct 707644 AGGTTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGA 707585 Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||||||||||||||| || || Sbjct 707584 CTAACTTTTTCGAGAAGCGCGTCGGTGATTA 707554 >seq347 Length=198302 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || || || || || || ||||| || | Sbjct 170690 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 170631 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| ||||||| |||||||| || || || Sbjct 170630 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 170571 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||| || ||| || Sbjct 170570 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCGCTAGACTCAAC 170512 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | ||| || ||||||| Sbjct 170511 CTCAAGGGTGATCGTCTTTCCGGTCA 170486 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || || Sbjct 169121 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCG 169062 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 169061 GCGAAGATCAAGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTG 169002 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || || | ||| | || ||||| |||| ||| Sbjct 169001 ACGTTG-TCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCTTGCCCGTCAAAGT 168943 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 168942 CTTGACGAAGATTTGCAT 168925 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || || || || || || ||||| || | Sbjct 180055 CCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 180114 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| ||||||| |||||||| || || || Sbjct 180115 AAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 180174 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || || ||||| |||| |||| |||||| || ||| || Sbjct 180175 ATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATGGTGTCGCTAGACTCAAC 180233 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 || | ||| | ||| || ||||||| Sbjct 180234 CTCAAGGGTGATCGTCTTTCCGGTCA 180259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || || ||| ||||||| |||||||| || || || || Sbjct 169316 GTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATT 169257 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 ||||||||||| || || ||||| |||| |||| |||||| | ||| || || Sbjct 169256 CCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATGGTGTCTGATGACTCAACCTC 169198 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | || ||||| |||| ||| || || || || ||||| Sbjct 169197 CAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 169153 >seq249 Length=210267 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| |||| || || || ||| || | || |||||||| |||| Sbjct 84120 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 84179 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||| || || || || || ||||||||||| ||| || ||||| | ||| Sbjct 84180 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 84239 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 84240 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAAA 84299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494784914880