Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq721 111 2e-19 seq609 87.8 2e-12 >seq721 Length=773014 Score = 111 bits (122), Expect = 2e-19 Identities = 340/517 (66%), Gaps = 14/517 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||| ||||| ||||| || |||| ||| |||||||| Sbjct 707553 GTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCGAGAGAGATGTTCTCCAT 707612 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 || || || ||||| | ||| ||| || || |||| | | ||||| Sbjct 707613 GAAGTCGAAGGGGTTGACGGCGTTGTAAACC-TTAACATTGCCAAGCGCAAGCAAGAGAC 707671 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | || |||| ||||||| |||| ||||||||| |||| | | | Sbjct 707672 GATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGC 707731 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 |||| | || || | ||| ||| |||||| | || || || | ||||||| Sbjct 707732 ATGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCGC 707791 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCT 127528 | | | || | ||| | ||| | | | | |||||| ||||| || Sbjct 707792 GGACGGCTTCAGGCGAAGGCTTCTTGT-TGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 707850 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||| | |||||||| || ||||||||||| || |||||| || || ||||||||| Sbjct 707851 GTGTGCATTCCCTCGTCGCGAGAGATGAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGA 707910 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || |||||||| | |||||| || | ||| | ||| ||||||||| ||||| ||| Sbjct 707911 CCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATACCCTCGACA 707970 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGT-ATC---AAACCACT 127703 ||||| || | |||||| ||||||| || | |||| ||| || ||||| Sbjct 707971 GCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCGCAAATCCACT 708025 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 ||| ||||| | ||||| || ||| || ||||| Sbjct 708026 TCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 708062 >seq609 Length=75599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/412 (66%), Gaps = 17/412 (4%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || || || || || || | ||| | ||| | ||||| | |||||| |||| Sbjct 69270 TCGAATCGTCCAGGCCGTAGCAAGGCCTTGTCCAATATATCGGGTCTGTTCGTACCCGCA 69211 Query 12765 ATGACAACGATGCCCGTCTCGT--TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 || || || | || || ||| | | ||| |||||||| ||||||| || || |||| Sbjct 69210 ATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCAGGATCTGGTTGA 69153 Query 12823 TGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACC----CGCACTGCGTTGCTTAC 12876 || ||| ||||||||||| | | | || | || || || | || | Sbjct 69152 GCGTGCTTTCCCGTTCATCATTTCCACCGCCAAAGTTGTTTTTCGATCT-CGAT--TTCC 69096 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCA 12935 | | |||||| ||||| |||||||||| ||| || ||| || | ||| | || | Sbjct 69095 CAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGTGGCG 69037 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | |||||| || | | |||||||||||||||||||||||| || | | | || Sbjct 69036 AACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGAGCCG 68977 Query 12996 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| | || ||| || || ||||| || || | ||| |||||| || ||||| Sbjct 68976 CTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCGTCTT 68918 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 68917 GCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 68866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499439133920