Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq400 132 8e-26 >seq400 Length=377941 Score = 132 bits (146), Expect = 8e-26 Identities = 451/689 (65%), Gaps = 13/689 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGC-GTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || |||||||| |||| | | | | ||| | || ||| || |||||||| Sbjct 293046 TCTTGATCGACAGTGAACTGGATGGGTGCTGAAG-CAGCCATGGTTCGGAGGTAGTACAT 293104 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || ||| ||| ||| || | ||||||||||| | |||| || | | Sbjct 293105 TCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGCATGGAAGTAATCTTGCCCATGGT 293164 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || |||||||||||||| ||| ||| || ||| |||||||| ||||| | Sbjct 293165 CGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGATCAATG-AAGGCGCCACGATCCG 293223 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| |||||||||| ||| || ||||| ||||||||| | | | || || Sbjct 293224 CAGCCATGGTGATAATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCTTTGA 293283 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | | || | || | | || || ||| || || || || || | | || Sbjct 293284 TATCATCGGGAATAT-TAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTC 293342 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | ||| ||| | |||| | || || || | ||| ||||||| | Sbjct 293343 TTCATGTTGTCCGACCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACG 293402 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || || || | ||||| | || | | | | || ||| |||| ||||| Sbjct 293403 ACTTGGAATTCCCCAGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAG 293462 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||||||| |||| ||| |||| ||| || || ||||| ||||| | || || Sbjct 293463 CACTCGTTGAAACCGAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAGCAACAAGAAGT 293522 Query 204314 GAGTTGCGCACACCGT-ATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| | ||||| || ||| | || ||| || ||| |||||| | | Sbjct 293523 GAGTTGCGAATACCGTGCTTCTTGATATCAGC-CTTGAGCGAGTCCCAGTCCCAGAGATC 293581 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 | || | ||| |||||||||| |||| | || || || ||||| ||||| Sbjct 293582 CGTAGGAGTGACGTTCCACATGTCGTACTGGAGAATACCCTGGGAAACTGGAGAGCCCTC 293641 Query 204433 GTACG--TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 ||| | | | || | || || |||| ||| |||||||| || | || || |||| | Sbjct 293642 GTAGGTTTTGTATGTGCCT--TCTTCTTGTGCAAGCTTGCAGGAAGAGGTCAAGGCGGCA 293699 Query 204491 TAGTACATGGTCTCAAAGATCTGAACGTT 204519 | ||| |||||||| ||||| |||| ||| Sbjct 293700 TGGTAAATGGTCTCGAAGATTTGAATGTT 293728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| ||||||||| ||||||| | | || || |||||||| || | | | || Sbjct 294341 CTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTC 294400 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || |||||||| ||| || | ||| | | | | ||||||||||| ||||| | Sbjct 294401 TTTGCCGTGGTTCTTTCTCAGATCTAACCA-GTTGAAGACATCGGCGTGCCATGGCTCGA 294459 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||| || || | |||||| ||||| || || || ||||| ||| Sbjct 294460 GGTAGATGGCGAATGCACCAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCG 294519 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||| || || || ||||| || || |||||||| | || ||||| || Sbjct 294520 CGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGCCGTTTGT 294568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145141286720