Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq400 176 6e-39 seq721 127 3e-24 seq609 96.9 4e-15 >seq400 Length=377941 Score = 176 bits (194), Expect = 6e-39 Identities = 417/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || |||| || || || || || ||||| |||| Sbjct 294862 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 294803 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | |||||||| || | ||||| |||| ||||| | || || || ||| Sbjct 294802 ATACAGACATACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCTACACTTTTC 294743 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || ||||| ||| ||| | || ||| ||||| |||| | |||||||| Sbjct 294742 AACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGAC 294683 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || |||| ||| |||| ||||| || |||||| |||||| Sbjct 294682 AGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGT 294623 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| | |||| ||| || |||||| || ||| |||| ||||| Sbjct 294622 GGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAAC 294563 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 294562 GGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTT 294503 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| || | |||| |||| || |||||||||||| Sbjct 294502 GATCAAGGTGGCAACAAGCGTC---CTGGTGCATTCGCCATCTACCTCGAGCCATGGCAC 294446 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | | | | || || | ||||| || | || || |||| |||| Sbjct 294445 GCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGC-GTGC 294387 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 294386 TCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAA 294327 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 |||| | ||| ||||| | || || || || || ||||| ||||| | ||||| Sbjct 294326 TGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGA 294267 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTA 112231 ||||| ||||| |||||| ||||| Sbjct 294266 CGAGTTCGAAGCTCTCTACGAGAAGTA 294240 Score = 163 bits (180), Expect = 4e-35 Identities = 491/746 (66%), Gaps = 18/746 (2%) Strand=Plus/Minus Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 |||||||| | ||| | ||||| || ||||| || |||| ||| || | ||||| Sbjct 293818 CACCGTCCCGTCGGTGTTGGTGTACAGGGTCTTGCTGATGCTTTCCTTGCTCTTCGCCTG 293759 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | || || || ||| || ||| | |||| | || || ||||| || || || Sbjct 293758 CCCTTCGAGTCTCCCGAGGCAAAGAAGCTCAACATTCAAATCTTCGAGACCATTTACCAT 293699 Query 112725 GCCGCTCTTGAGGCGAGTTCGG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 ||||| ||||| | | | | || | ||| | | || || |||| |||||| | Sbjct 293698 GCCGC-CTTGAC-CTCTTCCTGCAAGCTTGCACAAGAAGAAGGCACATACAAAACCTACG 293641 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-G 112841 |||| ||||||| ||| || || | || || | || |||||| || || | || | | Sbjct 293640 AGGGCTCTCCAGTTTCCCAGGGTATTCTCCAGTACGACATGTGG-AACGTCACTCCTACG 293582 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 || || ||||||||| | ||||||| |||||| || | ||| |||| ||| Sbjct 293581 GATCTCTGGGACTGGGACTCGCTCAAGGCTGATATCAAGAAGCACGGTATTCGCAACTCA 293522 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 ||| | | || || |||||||| || ||||| | ||||| | ||| || || ||| Sbjct 293521 CTTCTTGTTGCTCCTATGCCAACTGCTTCCACATCTCAAATTCTCGGTTTCAACGAGTGC 293462 Query 112962 TTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 || || || |||||| | || ||||| ||| | | || || || || || | Sbjct 293461 TTCGAGCCATACACGTCAAATATCTACTCTC-GTCGTGTGCTTGCTGGGGAATTCCAAGT 293403 Query 113021 TGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 113078 |||||| ||| || | | || ||| ||||| ||||| ||||| | | ||| Sbjct 293402 CGTCAACC--CATGGCTGCTCAAAGATCTCGTCGAGATGGGTCTTTGGTCGGACAACATG 293345 Query 113079 AAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 ||| ||| || | || ||||||||| || || || ||| ||||||| ||||| Sbjct 293344 AAGAATCGTATCATTGCAGAGGGTGGTTCTATCCAGAACATTCCTAATATTCCCGATGAT 293285 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACA---TG 113195 || || | ||| || ||||||||||||| || | |||| || || Sbjct 293284 ATCAAAGCCCTTTACAAGACGGTTTGGGAAATCAGCC---AGCGTACCATTATCACCATG 293228 Query 113196 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGT 113255 || || |||||||| ||||||||||||| ||| || |||| | |||| || Sbjct 293227 GCTGCGGATCGTGGCGCCTTCATTGATCAATCTCAGAGCTTGAACATTCACATGAAAGAG 293168 Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 113315 || || ||| |||| | |||| |||||| | ||||||||| ||||||||| || Sbjct 293167 CCGACCATGGGCAAGATTACTTCCATGCACTTTGCTGGTTGGAAGATGGGTCTCAAGACT 293108 Query 113316 GGGATGTATTACCTCCGATCTAAGGC 113341 || ||||| ||||||||| | | ||| Sbjct 293107 GGAATGTACTACCTCCGAACCATGGC 293082 >seq721 Length=773014 Score = 127 bits (140), Expect = 3e-24 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 708063 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 708004 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 708003 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 707947 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 707946 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 707888 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| || |||||||| ||||||||| | ||| || ||||| Sbjct 707887 CCAACGAACTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 707842 >seq609 Length=75599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 246/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCA 15993 ||||| | || || || |||| |||||| ||| | | ||||||||||| || |||| Sbjct 69222 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 69165 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 | |||||| | || ||||||||||||||| | ||| ||| || || Sbjct 69164 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 69111 Query 16054 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 16103 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 69110 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 69051 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 69050 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 68992 Query 16164 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 68991 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 68933 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 16282 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 68932 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 68873 Query 16283 GGCGCCA 16289 || ||| Sbjct 68872 CGCACCA 68866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734547608640