Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq400 138 2e-27 seq721 120 6e-22 >seq400 Length=377941 Score = 138 bits (152), Expect = 2e-27 Identities = 475/733 (65%), Gaps = 12/733 (2%) Strand=Plus/Plus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | || || || ||| | || Sbjct 294248 GTAGAGAGCTT--CGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGG 294305 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||||| || | || ||| | || |||||| ||||| || |||||| Sbjct 294306 CACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCAC 294365 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | || | || ||||| | | ||| || || ||||| ||| || |||||||| Sbjct 294366 AAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCT 294425 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 || | | || | || |||||||| ||||| || |||| ||| | || || || ||| Sbjct 294426 AACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGC 294485 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||| ||||| || | | |||| |||| || || | || || Sbjct 294486 TTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACA 294545 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || ||||| ||| ||||| || || |||||| | || ||| | | | | || Sbjct 294546 AGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGA-TG 294604 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | |||||||||||| ||| || || ||||| || || ||||||| ||||| Sbjct 294605 TATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTC 294664 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||||||||| || | || || |||||||| | || | Sbjct 294665 GTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGG 294724 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 || | | | ||||| || || || || |||||| || ||||| ||||||| Sbjct 294725 TTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGTTAGACAT 294784 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATC 222539 | ||| |||| || | | | |||| || |||||||| | | || | || | Sbjct 294785 GTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACA-C 294843 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACG 222596 |||| ||| | || || | || ||| ||||| || | ||| ||||| | Sbjct 294844 GCATGATCATATGTTGTGGACGCT---CAGCGACCTTGCCGCTTATTCGGAGTAGGTATG 294900 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || |||||||||||||| |||||||| | | | || |||||| ||| || | || Sbjct 294901 ATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGG 294960 Query 222657 CGGCGTCCAGCTC 222669 | | || || ||| Sbjct 294961 CAGAGTTCAACTC 294973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 296/450 (66%), Gaps = 26/450 (6%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||| || ||||| |||||||| ||||| ||||||| |||| ||||||||| Sbjct 293688 GTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCTTCTTTGCCTCGGGA 293747 Query 221477 GAAGTGAAGGGCATACG--CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || |||||||| || |||| ||||| | || || || |||||||| || | || Sbjct 293748 GACTCGAAGGGCAGGCGAAGAGCA-AGGAAAG-CATCAGCAAGACCCTGTACACCAACAC 293805 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||| ||| | ||| | |||| | ||||| || |||||||| |||||||| Sbjct 293806 CGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGGATAGTGGTTGACGT 293865 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | || | ||||| | ||| || ||| | || || ||| || ||| | Sbjct 293866 CAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTGCAACTT------GT 293919 Query 221655 TGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC--T 221712 |||| | || | | ||||| ||| || | || || || ||| ||||| || | Sbjct 293920 TGAA-ATCA--TAGACGCCG-CGTTGAACG--TCAACGAA--GGTT---GGCAAAGCCAT 293968 Query 221713 G---GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | |||| ||| || || || ||||| || | |||| |||||||| || || Sbjct 293969 GGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCA 294028 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||| || ||||| |||| || || ||||| |||||| ||| ||| || Sbjct 294029 CAGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATC 294088 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTC 221859 ||||| ||||| || || ||||||||| Sbjct 294089 TTTGTAAAGCATGAAAGGGTTGCCAGTCTC 294118 >seq721 Length=773014 Score = 120 bits (132), Expect = 6e-22 Identities = 336/519 (65%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| ||||| |||||||||| | | | | |||| Sbjct 708059 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 708000 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| || || || || || ||||| ||||| ||||| |||||||| | ||| Sbjct 707999 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 707940 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | ||||||||||||||| || || ||||||||| || ||| |||||||| Sbjct 707939 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 707880 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | |||||||| | |||| || ||||||||||| |||| | ||| Sbjct 707879 CTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTC-----TCAC 707825 Query 26050 TTGCTCCAC---AAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 |||| || || ||||| | || ||||| | ||||||| ||||| || | Sbjct 707824 -AGCTCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAA 707766 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| |||| || | ||||||||| | Sbjct 707765 ATTGAGCAGGAATTCTTGAGCGAAGCATTACCATGCAGATTGCTCGGCATGAACTCTACC 707706 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCG 26224 |||||| |||| ||||| |||| ||| || || | ||| || ||| ||| || | Sbjct 707705 CTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC--GCTTGGCAATG 707648 Query 26225 CCAGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 | | |||| ||||| ||||| |||||||| ||||| ||||| || | | || Sbjct 707647 TTAAGGTTTACA--ACGCCGTCAACCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGG 707590 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||| || || ||| | ||||| || || || Sbjct 707589 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTACCA 707551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833050113280