Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq347 104 2e-16 seq249 87.8 1e-11 seq400 86.0 4e-11 >seq347 Length=198302 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||||||| || || || || || || || || |||||||| ||||||||| Sbjct 170846 TCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTG 170787 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| || || || |||| | | | ||| || |||||| Sbjct 170786 TCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATA 170727 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| ||||| ||||| ||||| Sbjct 170726 GTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 170695 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||||||| || || || || || || || || |||||||| ||||||||| Sbjct 179899 TCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTG 179958 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| || || || |||| | | | ||| || |||||| Sbjct 179959 TCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATA 180018 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| ||||| ||||| ||||| Sbjct 180019 GTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 180050 >seq249 Length=210267 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | ||||||||||||||| || | || ||||| || || |||||||| ||||| Sbjct 84152 ATCCTCCAATTGCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTT 84211 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || ||||| |||| | |||||||| || Sbjct 84212 GTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGAT 84271 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAA 480764 || || || ||||| || || |||||| Sbjct 84272 GGTCTTGCCCGTGAGGGTTTTGACGAAA 84299 >seq400 Length=377941 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 || |||||| |||| || | | || || | || || || || || || || ||||| Sbjct 111707 TACCTTGGAAAAGATGTCAAGAACGCCGTCGTCACCGTCCCCGCCTACTTCAACGATTCC 111766 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || ||||||||||| || ||||| || || | ||||||||||| | || |||| Sbjct 111767 CAGCGTCAAGCAACAAAGGATGCCGGTGCCATCTCCGGTCTTAATGTCCTTCGGGTTATC 111826 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 || || ||||| || || ||||| ||||| ||||| || ||| Sbjct 111827 AACGAGCCAACTGCTGCTGCACTCGCTTACGGTCTAGACAAG 111868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268135790409776