Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq721 129 6e-25 seq347 116 4e-21 seq400 113 4e-20 >seq721 Length=773014 Score = 129 bits (142), Expect = 6e-25 Identities = 344/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| ||||| |||||||| || || || | | || ||||| | Sbjct 707550 CTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCGAGAGAGATGTTCTC 707609 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| ||||| | || | ||| | | | | || Sbjct 707610 CATGAAGTCGAAGGGGTTGACGGCGTTGTAAACCTTAACATTGCCAAGCGCAAGCAAGAG 707669 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA-CG 120529 || || || |||||||| ||||||| ||||||| | ||||||||| ||||| | Sbjct 707670 ACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCT 707729 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 || || || || | || || |||| |||||| | || ||||| ||| |||| Sbjct 707730 GCAT-GGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGG 707788 Query 120590 CGAGCATAGTGTG-GCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 || | | | | | || ||| |||||| || || | | || ||||| | Sbjct 707789 CGCGGACGGCTTCAGGCGAAGGCTTCTTGT------TGAGCTGTGAGAAGAGGAGGCAGG 707842 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||| ||||||||||| || || || |||||| || |||| ||||| Sbjct 707843 CAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATGAGTTCGTTGGAGAAGGTCAAGCCGG 707902 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| |||| || | |||||| ||| ||||| | | Sbjct 707903 GCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATAC 707962 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCG---A 120823 |||| || || || ||||| | ||| || || || | ||| ||| | Sbjct 707963 CCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGT---AGAGTTGTCATCGCAAA 708019 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||| ||||| |||||||| ||||| | ||| || Sbjct 708020 TCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGG 708059 >seq347 Length=198302 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| | | | ||||||||||||||||| Sbjct 169121 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCA-TCCTCGAGCTGCTTGCC 169063 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 169062 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 169003 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| ||||| |||| ||| Sbjct 169002 GACGTTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCTTGCCCGTCAAAGT 168943 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 168942 CTTGACGAAGATTTGCAT 168925 Score = 109 bits (120), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| |||| || ||| ||| ||| || | Sbjct 170897 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT--ACGTCCGTCTTCCA 170840 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| || Sbjct 170839 ATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA 170780 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | || || || |||| || | || |||| Sbjct 170779 TCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATAGTCTTGC 170720 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| || ||||| Sbjct 170719 CGGTGAGGGTCTTCACGAAGATTTGCAT 170692 Score = 109 bits (120), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| |||| || ||| ||| ||| || | Sbjct 179848 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT--ACGTCCGTCTTCCA 179905 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || ||| | ||||| ||||||||||| ||||| || ||||||||||| || Sbjct 179906 ATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA 179965 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | || || || |||| || | || |||| Sbjct 179966 TCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATAGTCTTGC 180025 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| || ||||| Sbjct 180026 CGGTGAGGGTCTTCACGAAGATTTGCAT 180053 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | ||||||||||| || ||||| || |||||| Sbjct 169307 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTG 169248 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | ||||| | | ||| || || | ||||| | Sbjct 169247 TCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATG 169188 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||| || ||||| || ||||| Sbjct 169187 GTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 169153 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| | | | || ||||| |||||||| Sbjct 170660 GTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCTTCGAGTTGCTTGCC 170602 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 170601 GGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 170542 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | |||||| | | ||| || || | ||||| || || ||||||| Sbjct 170541 GACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTTCCGGTCA 170486 >seq400 Length=377941 Score = 113 bits (124), Expect = 4e-20 Identities = 597/936 (64%), Gaps = 38/936 (4%) Strand=Plus/Plus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATCTTCATC 148118 || |||||||| |||||||| || || ||||| || | || |||| | || Sbjct 293199 TGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGATAATGGTACGCTGGCTG---ATT 293255 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| |||||||||| || ||||||| ||||||||| ||| ||| | Sbjct 293256 TCCCAAACCGTCTTGTAAAGGGCTTTGATATCATCGGGAATATTAGGAATGTTCTGGATA 293315 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || || | | |||| || |||| ||| | ||||| | || | ||||| Sbjct 293316 GAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGACG 293375 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 || || | || ||| | | || || || || || || || || ||||| || || ||| Sbjct 293376 AGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACG-AGA 293434 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | || ||| | || || || |||||||| || | ||| || | || | Sbjct 293435 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 293494 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || || || || |||||||| | |||| | || || || | Sbjct 293495 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 293554 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || | ||||||||||||| || || || |||||||||||||||||||| || Sbjct 293555 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 293614 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 ||| || || | | || ||||||||| | |||| | || | | || || Sbjct 293615 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCAAG 293674 Query 148538 TTCGCAGCTCGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | |||| | || || ||| | | |||||| |||||| ||||| |||||||| Sbjct 293675 CTTGCAGGAAGAGGTCAAG-GCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGCT 293733 Query 148597 GCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | ||| ||| ||| | |||| || || | || || || ||||| | Sbjct 293734 TCTTTGCC---TCGGGAGACTCGAAGGGCAGGCGAAGAGCAAGGAAAGCATCAGCAAGAC 293790 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 ||||||| || || || | ||| ||||| |||| | | || || || || Sbjct 293791 CCTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCT-TCGGGAACG 293849 Query 148714 G-ATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCT 148771 | |||||||||| ||| |||||||||| |||| ||||| | || || | | Sbjct 293850 GGATAGTGGTTGACGTCAATGATCTTGTTCAAG-TTGCGAATGACAGTCTGGACGACTTC 293908 Query 148772 GCGCAGCAATTCAAAATCGTAC--------TTGT-CATCTACGATGCATCGGTTCACGGC 148822 | ||| | | ||||| || ||| | || |||| | | | || || Sbjct 293909 GTGCAACTTGTTGAAATCATAGACGCCGCGTTGAACGTCAACGAAGGTTGG---CAAAGC 293965 Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 || || || | ||||| || || |||||| || || |||||| | |||||| | Sbjct 293966 CATGGATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGT 294025 Query 148883 GCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 |||||||||| |||| || | |||| |||||| ||||||||||||| |||||| Sbjct 294026 GCACAGATTGGAGCTGCGAATGGTT---CCCAAGTTCTTCTGATTGCTCTTGCGGTTGCA 294082 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || ||||| |||||| | || |||||| || Sbjct 294083 AGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTC 294118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414684726880