Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq400 185 1e-41 seq223 93.3 5e-14 >seq400 Length=377941 Score = 185 bits (204), Expect = 1e-41 Identities = 419/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 ||||| |||||| ||||| ||||| ||||| |||| ||||| || || | Sbjct 294240 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 294299 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | |||| ||| | ||| | || || ||||||||||| ||||| ||| Sbjct 294300 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 294359 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||||| || | || ||||| | | || || ||||| | || ||||| || Sbjct 294360 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 294419 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || | | | | || ||| |||||||||||||| || |||| |||| || | Sbjct 294420 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA---ATGCA 294476 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| |||||| || ||||| || || |||| ||| || || ||| Sbjct 294477 CCAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 294536 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || |||| || ||| | ||| || ||||| || | ||| ||| | |||||| Sbjct 294537 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 294596 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | ||| |||| | || ||||| ||||| |||||| || ||||| | | Sbjct 294597 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 294656 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | |||||||| | ||| ||||||||| || | || ||||||||| || Sbjct 294657 AGGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 294716 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | |||||| ||||| || || ||||| || || || | ||||| |||| || | Sbjct 294717 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAA-GTATTT 294775 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | ||||| | || |||||||| | | |||| |||||||| || ||||| ||||||| Sbjct 294776 GTTAGACATGTAGTTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 294835 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||| || ||||||| ||| | ||||| Sbjct 294836 TGCCACACGCATGATCATATGTTGTGG 294862 Score = 118 bits (130), Expect = 1e-21 Identities = 682/1076 (63%), Gaps = 24/1076 (2%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | |||||| |||||||| || |||||||| || ||||| | | ||| Sbjct 293082 GCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGC 293141 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || |||| | |||| ||| || || || |||| | ||||| || ||| ||| Sbjct 293142 ATGGAAGTAATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGA 293201 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCAT----ATCAATGACATCCTTCATCTTAATTTC 110529 ||||||||| || || | || ||||| || |||| | || | ||||| Sbjct 293202 TCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT-AATGGTACGCTGGCTG---ATTTC 293257 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || || || ||||||||||| || |||| | || |||||||| || Sbjct 293258 CCAAACCGTCTTGTAAAGGGCTTTGATATCATCGGGAATATTAGGAATGTTCTGGATAGA 293317 Query 110590 ACCCCCCGCCTTCACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 ||| ||| | | || |||| ||| |||||| | | ||||| ||||| |||| Sbjct 293318 ACCACCCTC-TGCA--ATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGAC 293374 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 ||| || |||| || |||||| | || || || || || | | Sbjct 293375 GAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGA 293434 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| |||| |||||||| || ||||| || || ||| | ||||| | ||||| Sbjct 293435 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 293494 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | ||| ||| |||| ||| | || |||||| | Sbjct 293495 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 293554 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| |||||||| || || | | || | || |||| ||||||| |||| Sbjct 293555 CTTGAGCGAGTCCCAGTCCCAGA-GATCCGTAGGAGTGACGTTCC-ACATGTCGTACTGG 293612 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| | ||||| ||||| |||||| || | |||| ||| || Sbjct 293613 AGAATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCA 293672 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | | ||| | || || || || || ||||| || ||||| || || | | Sbjct 293673 AGCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTGAGC 293732 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACC 111063 | ||| || || || || || | | || | | | || || |||| || ||||| Sbjct 293733 TTCTTTGCCTCGGGAGACTCGAAGG-GCAGGCGAAGAGCAAGGAAAGCATCAGCAAGACC 293791 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 || ||||| | ||| | || | ||| || || || || |||||| Sbjct 293792 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGG 293851 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| || |||||||| ||| | || | ||| ||| || ||| || Sbjct 293852 ATAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTCTGGACGACTTCGTG 293911 Query 111184 -AAGTTTTTCATAATCAAAAGTGC-GAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 || || || | ||||| | || | || | | | || | |||| | || || Sbjct 293912 CAACTTGTTGA-AATCATAGACGCCGCGT-TGAACGTCAACGAAGGTTGGCAAAGCCATG 293969 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 |||||||| ||||||||||| |||||| | | |||||| | || || || || Sbjct 293970 GATGCCAAGTTGCAAACAGCAACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCAC 294029 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||||| || ||| || ||||| ||||| || || ||||| |||||| ||||| Sbjct 294030 AGATTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATCT 294089 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| |||||| | || | || ||||| ||||| | || ||||| || | ||| Sbjct 294090 TTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAATGGCGTACCA 294145 >seq223 Length=53752 Score = 93.3 bits (102), Expect = 5e-14 Identities = 223/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579 |||||||| || |||||||| | ||| ||| ||||| ||||| | | ||||||| || Sbjct 31763 CCCTTGATATGGGAACCATCGTGATCCTGATCCGTCATGATCATCAAATGACCATATCGC 31822 Query 182580 AGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGAT 182637 | | | || ||| || || ||||| || || || | || |||||||| | Sbjct 31823 AATCCTTTCGTGTCAGTGTACTCCTT--CTTGTGCTGCAGGCCCATGAACTTCTTGATGT 31880 Query 182638 CATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATT 182697 | || ||| ||| | || || ||||| | |||||| || || || ||| Sbjct 31881 TCTGGATCTCAGCGTTGTTGGAAATTTGGGCCACGGTAGCGTCTCGCACGTTGAGCAATT 31940 Query 182698 TACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCG 182757 |||| ||||| ||||| |||||| |||| || || || | | || |||| | Sbjct 31941 TACCACGAAGCGGGAAAACACCGATCAAATCAGGATTGACCACCGCACGCCCAGCAAGAG 32000 Query 182758 CGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC-- 182815 | || | || || |||||||| |||| |||||||||||| ||||||| || | Sbjct 32001 CAAGACCACTGGCAGAGTCACCCTCAGTGAGAATGAGAGTACA-TTTCCAG-CCGTCCTT 32058 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGG 182847 |||||||||||||| || || |||||||| Sbjct 32059 AGTACCCGCCTTGTTGGCATCCGTCAACTTGG 32090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024055395200