Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq400 268 1e-66 seq721 127 2e-24 seq609 87.8 2e-12 >seq400 Length=377941 Score = 268 bits (296), Expect = 1e-66 Identities = 1147/1798 (64%), Gaps = 85/1798 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| ||||| |||| ||||| || || |||||||| |||| | Sbjct 294862 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCC 294803 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | |||||||| || | ||||| | | || |||| ||||| | || || || || Sbjct 294802 ATACAGACATACAACTACATGTCTAACAAATAC-TTCACGCACGCCTCCCCTACACTTTT 294744 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| ||| ||| | || ||||||||| || | || |||||||| Sbjct 294743 CAACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGA 294684 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 294683 CAGCATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGG 294624 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | |||| ||| | |||||| | ||| ||| | || ||||| Sbjct 294623 TGGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAA 294564 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 294563 CGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGT 294504 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| ||| ||||| | || |||| |||| || ||||||||||| Sbjct 294503 TGATCAAGGTGGCAACAAGCGTCCTGGTGCAT---TCGCCATCTACCTCGAGCCATGGCA 294447 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| || | | | | || || | ||||| || | || || ||||| || Sbjct 294446 CGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG-TG 294388 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 294387 CTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGA 294328 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 |||| | ||| ||||| | || || || || |||||||| ||||| | |||| Sbjct 294327 ATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTG 294268 Query 104814 AGGAGTTTGAA---------------------GCC-------CTTTAC----------AC 104835 | ||||| ||| ||| ||| || || Sbjct 294267 ACGAGTTCGAAGCTCTCTACGAGAAGTAAGTTGCCACAAGTGCTTGACTACCGCCAATAC 294208 Query 104836 AAA----------GTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG 104885 || ||||||| ||||||| || | || || | | || | Sbjct 294207 TAACCGCTCCCAGGTACGAGAAAGAAGGCCGTGGCCGTGAAACTATCCGTGCCCAAAAGC 294148 Query 104886 TGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 | ||| | || ||||| |||| | || ||||||||||| | || | ||||||||||||| Sbjct 294147 TCTGGTACGCCATTCTTCAAGCC-CAGACCGAGACTGGCAACCCTTTCATGCTTTACAAA 294089 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || || || |||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 294088 GATGCTTGCAACCGCAAGAGCAATCAGAAGAACTTGGGAACCATTCGCAGCTCCAATCTG 294029 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 || || || ||| | || | | | |||||| ||||| || ||| | ||||| Sbjct 294028 TGCACTGAGATCATTGAGTACTCTGCGCCTGATGAGGTTGCTGTTTGCAACTTGGCATCC 293969 Query 105065 ATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATTATGAAAAACTCC 105122 || ||| | || | | || || | || | | | | | ||||| | || | | Sbjct 293968 ATGGCTTTGCCAACCTTCGTTGACGTTCAACG-CGGCGTC-TATGATTTCAACAAGTTGC 293911 Query 105123 ACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACC 105182 ||||||| | ||||||| ||| | |||| | ||||| || || | Sbjct 293910 ACGAAGTCGTCCAGACTGTCATTCGCAACTTGAACAAGATCATTGACGTCAACCACTATC 293851 Query 105183 CCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 ||||| || || || | |||||||| | ||| | ||||| |||| Sbjct 293850 CCGTTCCCGAAGCATACAACAGCAACTCCCGTCACCGTCCCGTCGGTGTTGGTGTACAGG 293791 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 |||| || |||| ||| || | ||||| | || || || ||| || ||| | Sbjct 293790 GTCTTGCTGATGCTTTCCTTGCTCTTCGCCTGCCCTTCGAGTCTCCCGAGGCAAAGAAGC 293731 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG--AGTT 105360 |||| | || || |||||||| || || ||||| ||||| | | | | || | Sbjct 293730 TCAACATTCAAATCTTCGAGACCATTTACCATGCCGC-CTTGAC-CTCTTCCTGCAAGCT 293673 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 ||| | | || || |||| |||||| ||||| ||||||| ||| || || | || Sbjct 293672 TGCACAAGAAGAAGGCACATACAAAACCTACGAGGGCTCTCCAGTTTCCCAGGGTATTCT 293613 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGG 105479 || | || |||||| || || | || | | || || |||||||| | ||||||| Sbjct 293612 CCAGTACGACATGTGG-AACGTCACTCCTACGGATCTCTGGGACTGGGACTCGCTCAAGG 293554 Query 105480 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCT 105539 |||||| || | ||| |||| ||| || || | ||||| |||||||| || | Sbjct 293553 CTGATATCAAGAAGCACGGTATTCGCAACTCACTTCTTGTTGCTCCTATGCCAACTGCTT 293494 Query 105540 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-T 105598 |||| | ||||| | ||| || || ||||| || || |||||| | || ||||| | Sbjct 293493 CCACATCTCAAATTCTCGGTTTCAACGAGTGCTTCGAGCCATACACGTCAAATATCTACT 293434 Query 105599 CTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGACC 105656 || | | || || || || || | |||||| ||| || | | || | Sbjct 293433 CTC-GTCGTGTGCTTGCTGGGGAATTCCAAGTCGTCAACC--CATGGCTGCTCAAAGATC 293377 Query 105657 TCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTT 105716 || ||||| ||||| ||||| | | |||||| ||| || | || |||||||| Sbjct 293376 TCGTCGAGATGGGTCTTTGGTCGGACAACATGAAGAATCGTATCATTGCAGAGGGTGGTT 293317 Query 105717 CCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGG 105776 | || || || ||| ||||||| |||| || || | ||| || ||||||| Sbjct 293316 CTATCCAGAACATTCCTAATATTCCCGATGATATCAAAGCCCTTTACAAGACGGTTTGGG 293257 Query 105777 AAATCAAGATGAAGGATGTCATTGACA---TGGCCGCAGATCGTGGTCGCTTCATTGATC 105833 |||||| || | |||| || |||| || |||||||| ||||||||||| Sbjct 293256 AAATCAGCC---AGCGTACCATTATCACCATGGCTGCGGATCGTGGCGCCTTCATTGATC 293200 Query 105834 AAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGC 105893 || ||| || |||| | |||| || || || ||| |||| | |||| |||| Sbjct 293199 AATCTCAGAGCTTGAACATTCACATGAAAGAGCCGACCATGGGCAAGATTACTTCCATGC 293140 Query 105894 ACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 || | ||||||||| ||||||||| || || ||||| ||||||||| | | ||| Sbjct 293139 ACTTTGCTGGTTGGAAGATGGGTCTCAAGACTGGAATGTACTACCTCCGAACCATGGC 293082 >seq721 Length=773014 Score = 127 bits (140), Expect = 2e-24 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 708063 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 708004 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 708003 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 707947 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 707946 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 707888 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| || |||||||| ||||||||| | ||| || ||||| Sbjct 707887 CCAACGAACTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 707842 >seq609 Length=75599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/367 (66%), Gaps = 23/367 (6%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCA 9632 ||||| | || || || |||| |||||| | | | | ||||||||||| || |||| Sbjct 69222 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 69165 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 9692 | ||||| | || ||||||||||||||| | ||| ||| || || Sbjct 69164 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 69111 Query 9693 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 9742 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 69110 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 69051 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 9802 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 69050 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 68992 Query 9803 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 68991 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 68933 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 68932 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 68873 Query 9922 GGCGCCA 9928 || ||| Sbjct 68872 CGCACCA 68866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253421750880