Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq663 158 4e-33 seq347 107 6e-18 seq953 95.1 4e-14 seq249 91.5 4e-13 >seq663 Length=306411 Score = 158 bits (174), Expect = 4e-33 Identities = 490/746 (66%), Gaps = 22/746 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || |||||||| ||||| || || || || || | | | | | |||| ||| Sbjct 217754 GCTATCGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGATGACCGT 217813 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| ||||| || || || |||||| | ||||| ||||| | |||||| || || Sbjct 217814 ATCGAAATCATTGCCAACGACCAGGGTAACCGCACAACACCATCCTTCGTTGCCTTCACA 217873 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || ||| | |||||||| || || || || || | || || || || Sbjct 217874 GATACGGAACGTCTCATTGGTGACTCGGCGAAGAACCAGGTCGCCATGAACCCCGTCAAC 217933 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432 || || || ||||| ||||| || |||||| | |||||| | |||| | || Sbjct 217934 ACTGTCTTCGATGCCAAGCGCCTCATTGGTCGCAAGTTTGCCGATGCTGA--AGTC---- 217987 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAAT 349491 || ||||| | || || || || || | | || | | ||| ||| || || | Sbjct 217988 CAGGCTGATATGAAGCACTTCCCCTTCAAGATCGT-CGACAAGCTCGGC---AAGCCTGT 218043 Query 349492 TATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 | | || |||| | || || || || || || || ||| || || || || || | Sbjct 218044 TGTCCAGATTGAGTTCAAGGGCGAGACCAAGACT-TTCACACCAGAGGAGATCTCCTCCA 218102 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 || | || || ||| || | |||||| |||| | || | || || | | | Sbjct 218103 TGATCTTGACCAAGATGCGCGAGACCGCTGAATCATACCTCGGAGGTACCGTCAACAACG 218162 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 | || | || || ||||| || || || || | ||||| || ||||| || || | Sbjct 218163 CCGTCGTCACAGTCCCAGCATACTTCAACGACTCGCAGCGACAAGCCACAAAGGACGCCG 218222 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||||| || | || || || | || || || |||||||| || || || || | Sbjct 218223 GTCTCATTGCTGGTCTCAACGTCCTTCGCATCATCAACGAACCCACAGCCGCTGCTATCG 218282 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 | ||||| || || || | | | || || || |||| || || ||| | ||| Sbjct 218283 CTTATGGTCTCGACAAGAAG-GCCACTGGTGAGCGCAACGTTCTCATCTTCGATCTCGGT 218341 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || || || || ||||| || || | || |||| ||||| ||||| || || || | Sbjct 218342 GGCGGAACCTTCGATGTGTCTCTTTTGACCATTGAGGAGGGTATTTTCGAGGTCAAGTCC 218401 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || | || || ||||| || || || |||||||| || || Sbjct 218402 ACTGCTGGTGACACTCACTTGGGCGGTGAAGACTTCGACAACCGTCTCGTCAACCACTTC 218461 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAA 349935 ||||| ||||| |||||| ||| ||| Sbjct 218462 GTTAACGAATTCAAGCGT-AAGGTAA 218486 >seq347 Length=198302 Score = 107 bits (118), Expect = 6e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | |||||| | || ||||| || || || || || || | Sbjct 180047 TTTGCATACCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGT 180106 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| || || || |||||||| ||||| || || || ||||| | || ||||| | Sbjct 180107 AGTCAGACAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGT 180166 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || || || ||||| || | || || || || || | || | Sbjct 180167 CTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAG 180226 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 ||||| ||||| || | ||||||||||| | ||| Sbjct 180227 ACTCAACCTCAAGGGTGATCGTCTTTCCGGTCACTGT 180263 Score = 104 bits (114), Expect = 7e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | |||||| | || ||||| || || || || || || | Sbjct 170698 TTTGCATACCACCGCGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGT 170639 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| || || || |||||||| ||||| || || || ||||| | || ||||| | Sbjct 170638 AGTCAGACAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGT 170579 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || || || || || | || | Sbjct 170578 CTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAG 170519 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 ||||| ||||| || | ||||||||||| | ||| Sbjct 170518 ACTCAACCTCAAGGGTGATCGTCTTTCCGGTCACTGT 170482 Score = 95.1 bits (104), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| ||||| || ||||| || || || || | Sbjct 169159 TTTGCATACCACCACGGAGGCGGAGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGT 169100 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || || ||||| | || ||||| | Sbjct 169099 AGTCTGAGAGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGT 169040 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || || || || || | || |||| Sbjct 169039 CTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGATG 168980 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | || | ||||| || || | || || || || || ||||| Sbjct 168979 ACTCAACCTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 168925 >seq953 Length=641880 Score = 95.1 bits (104), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || |||||| || || | ||||| || || |||||||| ||| Sbjct 292605 CGAGGAACACCAAGCGTCACATTC---TTTGACGAGACACCGGCGAAATGGAAAGTGTTA 292549 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||| || | ||| |||||||| ||||| ||||||| |||||||||||| || Sbjct 292548 AGCGTCATTTGTGTTGCGGGTTCACCAATCGACTGTGCTGCAAGAACGCCAACCATGTCA 292489 Query 377578 CCAGGATT 377585 || || || Sbjct 292488 CCCGGGTT 292481 >seq249 Length=210267 Score = 91.5 bits (100), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 |||| ||| | | | ||||| || || || || || || || ||||| || | ||| Sbjct 84106 TGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGC 84164 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 |||||||||||||||| || || || || || |||||||| || || || || || || Sbjct 84165 TTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTG 84224 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| || || | ||||| | || || ||||| || | ||||| || || Sbjct 84225 GTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTG 84284 Query 140715 AGTGTTTTTACAAAA 140729 || ||||| || ||| Sbjct 84285 AGGGTTTTGACGAAA 84299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515234752832636