Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq347 167 3e-36 seq249 136 5e-27 seq825 98.7 1e-15 >seq347 Length=198302 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| || || | |||||||||||| Sbjct 168925 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 168984 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || ||||||||| Sbjct 168985 GACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 169044 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| || ||||| ||||||| || Sbjct 169045 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACCCTCTCAGACTACAAC 169104 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | || || || ||||| Sbjct 169105 ATCCAGAAGGAGTCCACACTTCACCTTGTCCTCCGCCTCCGTGGTGG 169151 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||||||||| | || | ||| | || | ||| | Sbjct 180257 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACGTCAAGACC 180198 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||||||||| || |||||||||||||| | || || || || ||| Sbjct 180197 AAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 180138 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| || ||| | | ||||| || |||| |||||||||||||| || Sbjct 180137 CAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATCCAGAAGGAATCCACTCTCCAC 180078 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| |||||||| Sbjct 180077 TTGGTTCTACGTCTCCGCGGTGG 180055 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||||||||||||||| || || ||||| || | Sbjct 170692 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 170751 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || ||||||||||| || ||||||||||||||| Sbjct 170752 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 170811 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || |||||| | || || | ||||| | ||| ||||| || Sbjct 170812 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGC-GACTACAA 170870 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || | |||||||| || || Sbjct 170871 CATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGG 170918 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||||||||||||||| || || ||||| || | Sbjct 180053 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 179994 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || ||||||||||| || ||||||||||||||| Sbjct 179993 GACACCATCGACAATGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 179934 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || |||||| | || || | ||||| | ||| ||||| || Sbjct 179933 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGACGTACGTTGAGC-GACTACAA 179875 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || | |||||||| || || Sbjct 179874 CATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGG 179827 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||||||||| | || | ||| | || | ||| | Sbjct 170488 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACGTCAAGACC 170547 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || |||||||||||||| | || || || || ||| Sbjct 170548 AAGATCCAGGACAAGGAGGGCATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 170607 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| || ||| | | ||||| || |||| |||||||||||||| || Sbjct 170608 CAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATCCAGAAGGAATCCACTCTCCAC 170667 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| |||||||| Sbjct 170668 TTGGTTCTACGTCTCCGCGGTGG 170690 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| || || | |||||||||||| Sbjct 169153 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 169212 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||| |||||||||||||| || ||||||||| Sbjct 169213 GACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAG 169272 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||||| | || || || || ||||| |||||||||| || ||||| Sbjct 169273 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACCCT 169319 >seq249 Length=210267 Score = 136 bits (150), Expect = 5e-27 Identities = 141/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || ||||| || || || |||||||| || || |||||||| ||||| ||| | || Sbjct 84298 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 84239 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || || ||||||||||||||||| |||||||| ||||| || Sbjct 84238 GACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTA 84179 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || |||||||| |||||| | ||||||| |||||| | ||| ||||| || ||||||| Sbjct 84178 ATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGC-GACTACAACATCCAAAA 84120 Query 27594 GG 27595 || Sbjct 84119 GG 84118 >seq825 Length=464296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| ||||| || |||||||||||||| | || || || || ||||| ||||| Sbjct 424428 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 424369 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || |||||| | ||||| || |||| ||||| || || || || || ||| | Sbjct 424368 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTC 424309 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 424308 CGACTCCGTGGTGG 424295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303185573440