Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq347 176 1e-38 seq249 131 4e-25 seq825 120 7e-22 >seq347 Length=198302 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 169136 AGGACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGTCCATCC 169077 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 169076 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 169017 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || |||||||| | ||||| ||| Sbjct 169016 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTC 168957 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | |||||| || || | ||||| Sbjct 168956 TTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 168925 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| | || ||||| || |||||||| || || | ||| | Sbjct 170913 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACG- 170855 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||| ||||||| ||||| || |||||||| ||||| || ||||| ||||||| | Sbjct 170854 TACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATAC 170795 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||||||||||||| || || || ||||||||||||||| |||||| |||| Sbjct 170794 CTTCCTTGTCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGA 170735 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || ||||| ||||| || || | ||||| Sbjct 170734 GTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 170692 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| | || ||||| || |||||||| || || | ||| | Sbjct 179832 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACG- 179890 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||| ||||||| ||||| || |||||||| ||||| || ||||| ||||||| | Sbjct 179891 TACGTCCGTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATAC 179950 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||||||||||||| || || || ||||||||||||||| |||||| |||| Sbjct 179951 CTTCCTTGTCCTGGATCTTCGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACTTCGA 180010 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || ||||| ||||| || || | ||||| Sbjct 180011 GTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 180053 Score = 141 bits (156), Expect = 2e-28 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| |||||||| || || |||||||| || || | | ||| Sbjct 170684 CGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTG 170625 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || |||||||| |||||||| | ||| || ||||| || || | || Sbjct 170624 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATGCCC 170565 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 ||||||||||||||||| || ||||| ||||||||||| ||| |||||||| Sbjct 170564 TCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC---GCTAGACTCAACCTCA 170508 Query 211071 AGAGTGATCGTCTTTCCCGT 211090 || |||||||||||||| || Sbjct 170507 AGGGTGATCGTCTTTCCGGT 170488 Score = 136 bits (150), Expect = 9e-27 Identities = 151/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||| |||||||| || || |||||||| || || | | ||| Sbjct 180061 CGGAGACGTAGAACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTG 180120 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || |||||||| |||||||| | ||| || ||||| || || | ||| Sbjct 180121 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCC 180180 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCG 211070 |||||||| || ||||| || ||||| ||||||||||| ||| |||||||| Sbjct 180181 TCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGA---CTCAACCTCA 180237 Query 211071 AGAGTGATCGTCTTTCCCGT 211090 || |||||||||||||| || Sbjct 180238 AGGGTGATCGTCTTTCCGGT 180257 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | |||||| || ||||||||||| |||||||| | ||| || ||||| || || Sbjct 169319 AGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 169260 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | ||| |||||||| || ||||| || ||||| ||||||||||| || |||||| Sbjct 169259 ATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTCTGATGACTCAACC 169200 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| ||||| ||||| | |||||| || || | ||||| Sbjct 169199 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATTTGCAT 169153 >seq249 Length=210267 Score = 131 bits (144), Expect = 4e-25 Identities = 149/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCT 210969 ||||| ||| | | | ||||||||||| || || | ||| ||| | |||||| |||| | Sbjct 84105 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAA-GGTACGTCCATCCTCCAATT 84162 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || |||||||| || |||| ||| |||||||| ||||||| Sbjct 84163 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 84222 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || || ||||| ||||||||| || ||||| || ||||| ||||| |||| Sbjct 84223 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 84282 Query 211090 TGAGAGTCTTTACAAA 211105 |||| || || || || Sbjct 84283 TGAGGGTTTTGACGAA 84298 >seq825 Length=464296 Score = 120 bits (132), Expect = 7e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| ||||| || || ||||| || |||||||| || |||| ||||| Sbjct 424300 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGT 424359 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||||||||| |||||||| | ||| || ||||| || || | ||| Sbjct 424360 GCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 424419 Query 211013 TTCCTTGTC 211021 ||||||||| Sbjct 424420 TTCCTTGTC 424428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136970145380