Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq597 98.7 1e-15 seq110 82.4 9e-11 >seq597 Length=589508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 342/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 283799 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 283740 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 283739 CCCATCTTCCAACCAGCAAAGTGCATCGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 283680 Query 52928 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 283679 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 283621 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 || || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 283620 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCGTCGGGAAT 283561 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 || | | ||||| ||||| ||||| ||| | || || | |||||| || | || Sbjct 283560 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 283501 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 283500 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 283441 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 283440 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 283381 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 53282 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 283380 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 283322 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 283321 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 283274 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 ||| || || ||||||| || ||||| || ||||||| || | | || | || || Sbjct 282897 CAAAGCCATGGATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGAT 282838 Query 53761 CTCAGTGCAAAGATT---ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 ||||||||| ||||| |||| |||||||| || || | ||||| ||||| Sbjct 282837 CTCAGTGCACAGATTGGAGCTAC---GAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCG 282781 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||| || ||||| || ||||| ||||| || | ||||| || |||||| || | ||| Sbjct 282780 GTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAAT 282721 Query 53878 CGCTTTCCAGA 53888 || | ||||| Sbjct 282720 GGCGTACCAGA 282710 >seq110 Length=125662 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || ||||| |||||||| ||||| |||||||| ||||| || |||| || || | || | Sbjct 62927 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 62986 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 62987 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 63046 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 24607 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 63047 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 63105 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 63106 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 63165 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| |||||| Sbjct 63166 CTTGTACATGCGCCAGAT 63183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593713881619200