Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq110 152 5e-32 seq264 109 6e-19 seq520 93.3 4e-14 seq265 87.8 2e-12 >seq110 Length=125662 Score = 152 bits (168), Expect = 5e-32 Identities = 204/283 (72%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||||||||||||| ||||| ||| || || ||||||| ||| ||| | || || Sbjct 63183 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 63124 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| |||||| | ||| |||||||| |||| ||| ||||||| Sbjct 63123 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 63064 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || |||||||| || || ||||||||||||||||| || |||| ||| Sbjct 63063 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACGT 63004 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | || || ||||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 63003 TTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCATG 62944 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915 || ||| | || || || | || || ||| ||||| |||| Sbjct 62943 GAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 62901 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 ||| || || || ||||| || |||||||| ||||||| ||| || || | || Sbjct 62727 GCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTAT 62668 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 || ||||||||||| ||||| |||||||||||| |||| ||| |||||| || ||||| Sbjct 62667 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTC 62608 Query 117157 CAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||||| |||| |||||||||||| Sbjct 62607 TCGCGACGAGGGAATGCACACCGACTTTGCCTG 62575 >seq264 Length=644297 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || |||| || ||| || | Sbjct 590766 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 590707 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| || || || || | || || Sbjct 590706 GACACCATCGACAACG-TCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCA 590648 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||| |||| || | || || | | ||||||||| Sbjct 590647 GCAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGTTGAGCGACTACAA 590588 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 590587 CATCCAGAAGGAGTCGACCTTGCA 590564 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || || || | | ||||| | | | |||| ||||| Sbjct 591198 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACG-TCAAGAC 591140 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||| ||||| | |||||||| || | |||| ||| ||||| Sbjct 591139 CAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 591080 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | || |||||| ||||||||||||||||||||| |||| || || Sbjct 591079 GCAGCTCGAGGATGGCCGAACCCTCTCAGACTACAACATCCAGAAGGAGTCCACACTCCA 591020 Query 40893 TCTAGT 40898 || || Sbjct 591019 CCTCGT 591014 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || | | Sbjct 590994 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 590935 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| ||||| ||||| | |||||| Sbjct 590934 GACACTATCGACAATGTTAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 590875 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| || || || || | |||||| | |||||||||| Sbjct 590874 CAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGATGGCCGCACCTTGTCCGACTACAAC 590815 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||| || || Sbjct 590814 ATCCAGAAGGAATCCACTCTCCA 590792 >seq520 Length=276588 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| ||||| ||||||||||| ||||||||| | || ||||| || | |||| | Sbjct 100573 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 100514 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || | ||||| || ||| | Sbjct 100513 GACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTA 100454 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || || |||| || | || ||| | | ||||||||||||||| ||| Sbjct 100453 ATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAAAG 100394 Query 40879 G 40879 | Sbjct 100393 G 100393 >seq265 Length=369171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || |||||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 48871 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 48812 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||| ||||||||||||||||||||| | || || || || || Sbjct 48811 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 48756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212502150400