Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq110 147 3e-30 seq176 109 8e-19 seq597 86.0 9e-12 >seq110 Length=125662 Score = 147 bits (162), Expect = 3e-30 Identities = 295/434 (68%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||| || || ||||| |||||||| || ||||| | ||||| Sbjct 62723 CTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTC 62664 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| |||| | ||||| |||| ||||| Sbjct 62663 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTCTCGC 62604 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 |||||||| | ||| ||||||||| || || || || || || | | || Sbjct 62603 GACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCT-----CAACAAGA 62549 Query 125606 GTGCAGATCCAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | || || |||| ||| | ||| | ||||| || || || || | Sbjct 62548 ------AGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGC 62495 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | || || | | |||| | ||||| ||| || | |||||||||| | || |||| Sbjct 62494 AGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACCCTCATGT 62435 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGA 125781 || ||||||| |||||||| || |||||||| || | | | |||| |||| Sbjct 62434 GCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCT---TGGCAATGTCAAGG 62378 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 ||||||||||| || ||||| || |||||| | |||||| || | || ||||| | Sbjct 62377 TTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGACTA 62318 Query 125842 ACTTTTTCGAGAAG 125855 |||||||||||||| Sbjct 62317 ACTTTTTCGAGAAG 62304 >seq176 Length=404529 Score = 109 bits (120), Expect = 8e-19 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || || || || || ||||| ||||| ||| | || | || || |||||| Sbjct 205351 AAGAAGGTGACCTTGGACCGGTCTACGGGTTCCAATGGCGACATTTTGGAGCCGAGTATG 205292 Query 70122 TAGACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 | || ||| || ||||| ||| | ||||| || || |||||| || |||||| |||| || Sbjct 205291 TGGA-TGCAAGGACAGATTATACCGGTCAAGGCGTGGATCAACTGGCAGACA-TCATGGA 205234 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || ||| | | ||| | || | |||||||||||||||| Sbjct 205233 CAAACTGAAGAACAAGCCTTACGATCGCCGAATCATCTTGAGTGCATGGAATCCTGCAGA 205174 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 ||| ||||||| || || || || ||| ||||| |||||||| ||| Sbjct 205173 CTTGACGAAAATGGCCCTCCCCCCTTGCCACATGTTT-GCTCAGTTCTAC 205125 >seq597 Length=589508 Score = 86.0 bits (94), Expect = 9e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||||||||||| | | || || || || |||||| | | | | || | | || Sbjct 282287 AACAAACGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCG 282346 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || ||||| || || || || || | ||| ||||| | || || || Sbjct 282347 CTACGTTGATCAAGGTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATG 282406 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || ||| | || || | || ||| ||| ||||| || || Sbjct 282407 GCACGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG 282466 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || ||||| | ||| | || || ||||||||||||||||| | | Sbjct 282467 TGCTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACA 282526 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||||| || |||||||| || || || ||||| ||||| || || Sbjct 282527 GAATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGG 282586 Query 97106 CGAAGAGTTTGAGGC 97120 || ||||| || || Sbjct 282587 TGACGAGTTCGAAGC 282601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049566230400