Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq597 132 6e-26 seq110 87.8 2e-12 >seq597 Length=589508 Score = 132 bits (146), Expect = 6e-26 Identities = 597/936 (64%), Gaps = 10/936 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||||||||| || | | || | | || ||||| || || | || ||||| | | Sbjct 282599 TTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGT 282540 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || | | | || || ||||| || || || |||||||| | || ||| | Sbjct 282539 CCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACA-AGGCATAGA 282481 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | ||||| | | | ||| || || || |||||| | ||||| | | | Sbjct 282480 AAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGA 282421 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | ||| | ||||| || || | ||| ||||| | | ||||| || ||||| || | Sbjct 282420 AGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCAC 282361 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 | ||||| | ||| | ||| || | | | || | | ||| |||| || ||| || | Sbjct 282360 CTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCG 282301 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 |||| || || || ||| || || |||| |||| || || | || || | Sbjct 282300 ATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGC 282241 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | || || || | || || || | || || ||||| |||| Sbjct 282240 CGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCT 282181 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 | ||||| || ||| || ||| || || || || || | ||| | || || | Sbjct 282180 CGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGC 282121 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | || || || | || || || ||||| || || |||| | ||| | |||| |||||| Sbjct 282120 CTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAG-TTGTAC 282062 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 |||| |||||| || || || ||| | ||||| || ||||| |||||||| | ||| Sbjct 282061 GTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 282002 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || || || | ||| ||| |||| | ||||| | | ||| ||| |||| || Sbjct 282001 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGGGTC 281942 Query 63650 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 || || ||||| || | ||| ||||| |||| ||||| | ||| | ||||| | | Sbjct 281941 TTGAAGCCAAAGTATTGGTAATTGAAA--TCTCTGTCGTATACAATGGCAGAGTTCAACT 281884 Query 63708 TATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCC 63767 |||| || || | || | || || ||||| ||||| | | || Sbjct 281883 CATCCGCATGCTTCATGACGGTGTTGTATGTGATGTCCGAAATCATAGGGCATTTCTTGT 281824 Query 63768 CATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 63827 || || || |||| ||| | | | | || | || || || || | || || | Sbjct 281823 TGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGACAGCAGAGAACTGCTTCTTGG 281764 Query 63828 TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 63887 ||| ||||| |||||||||||||| || | || || || || || || || ||||| | Sbjct 281763 TTTGCTTGTGAAGATTTGATACGGCGATACGTGCTGCAAGGATTGCGTAGTCGGGATG-T 281705 Query 63888 GTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGA 63922 ||| | || || |||||| | || || ||| || Sbjct 281704 GTGACGGTCATGTACGCTGCTGTCTCAGCGGCCTGA 281669 Score = 102 bits (112), Expect = 1e-16 Identities = 343/528 (65%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || ||||| || || || | | || || || ||||||||||| || || ||| Sbjct 283799 GTGAACTGGATGGGTGCTGAAGCAGCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGA 283740 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||| ||||| || | ||| |||| ||| || Sbjct 283739 CCCATCTTCCAACCAGCAAAGTGCATCGAAGTAATCTTGCCCATGGTCGGCTCTTTCATG 283680 Query 61970 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 || || |||| || | ||| |||||| |||||||| || | || |||||||| | || Sbjct 283679 TGAATGTTCA-AGCTCTGAGATTGATCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT 283621 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 ||| || || |||||||||| || || |||| ||| ||||| || |||| Sbjct 283620 AATGGTACGCTGGCTGATTTCCCAAACCGTCTTGTAAAGGGCCTTGATATCGTCGGGAAT 283561 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 || | | ||||| || || ||||| ||||| || || | |||||| || | || Sbjct 283560 ATTAGGAATGTTCTGGATAGAACCACCCTCTGCAATGATACGATTCTTCATGTTGTCCGA 283501 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | ||||| | | || | || || || || || ||||| ||||| || Sbjct 283500 CCAAAGACCCATCTCGACGAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCC 283441 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | |||| ||| ||||| || || || || | |||| || || Sbjct 283440 AGCAAGCACACGACGAGAGTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACC 283381 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGAC 62324 | |||||||| || || ||||| |||||||| | || ||| || | || | || || Sbjct 283380 GAGAATTTGAGATGTGGAAGCAGTTGGCATAGGAG-CAACAAGAAGTGAGTTGCGAATAC 283322 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 ||| | |||| | | | || || | ||||| | ||| ||||||| Sbjct 283321 CGTGCTTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGATCCG 283274 >seq110 Length=125662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || ||||| |||||||| ||||| |||||||| ||||| ||||||| || || | || | Sbjct 62927 TCGGAATGGATGTTTTCCATGGCGATTTGAAAACCGTAAAAGCATCGGGCTTCTGGAACC 62986 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| | | ||| ||||| | || || || || || || || ||||| Sbjct 62987 TGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCGTTGACGATGCCATCCGATGCTGCG 63046 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCA 33133 ||||| || | | ||| || ||| | |||||| | ||| | || ||||| Sbjct 63047 AAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCGTC-GTCGTTCAGGCGGTTGTTCCA 63105 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | ||||| || | ||| | ||||| | ||||||||||| ||| |||||| Sbjct 63106 GTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCGGTCCAAAATGAGGCCATTGCCTT 63165 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| |||||| Sbjct 63166 CTTGTACATGCGCCAGAT 63183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633623762784000