Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq264 167 4e-36 seq520 125 1e-23 seq110 105 1e-17 >seq264 Length=644297 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || ||||| || || |||||||| || ||||| Sbjct 590768 CCACCGCGGAGACGTAGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 590827 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| || | | || ||||| ||||| Sbjct 590828 AAGGTGCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 590887 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||||| ||||||| ||| || || Sbjct 590888 ATACCCTCCTTGTCCTGGATCTTGGTCTTAACATTGTCGATAGTGTCTGATGACTCAACC 590947 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| | ||||||||||| |||||||| Sbjct 590948 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 590994 Score = 165 bits (182), Expect = 2e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || ||||| || | |||||||| | || ||||| || |||||||| || Sbjct 590533 TTAGTTGCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTA 590592 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| | || | |||||||| |||||||| |||||||| ||||| | || || || Sbjct 590593 GTCGCTCAACGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGATC 590652 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| ||||||||||| || ||||| | ||||||| ||||||||||| | || Sbjct 590653 TGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGA 590712 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | || || || || || ||||||||||| ||||| || ||||| Sbjct 590713 TTCAACTTCGAGTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 590766 Score = 140 bits (154), Expect = 6e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || || ||| Sbjct 590996 CCACCACGGAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAG 591055 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| ||||| Sbjct 591056 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 591115 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||||||||| | ||||||| ||||||||||| ||| || || || Sbjct 591116 ATTCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTAGACTCAAC 591174 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || ||||| || Sbjct 591175 CTCAAGGGTGATCGTCTTTCCGGT 591198 >seq520 Length=276588 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || ||| | || | ||||| || || ||||| || || || || Sbjct 100395 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 100454 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || |||||||| || ||||| || ||||||||||| ||||| | |||||| ||| Sbjct 100455 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 100514 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||||||||| |||||||| Sbjct 100515 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAA 100573 >seq110 Length=125662 Score = 105 bits (116), Expect = 1e-17 Identities = 265/401 (66%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| || || ||||||||||| || || || |||||| ||||| | ||| || | Sbjct 62271 CATCACTCCAGCCTTCTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGC 62330 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCG--CCAAACTGCTTGGGGTAA 10052 || || ||| |||||||||||| |||||||| ||||| |||| |||| | Sbjct 62331 AAGAGATATGTTCTCCATGAAGTCGAAGGGGTTGACGGCGTTGTAAAC--CTTGACATTG 62388 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || || | || ||||| || |||||||||||||||| ||| ||| ||| Sbjct 62389 CCAAGCGCAAGCAAGAGACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAG 62448 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | || | ||| || | || |||| | ||| |||| || | || Sbjct 62449 TTCATGCCGAGCAATCTGCACGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACT 62508 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 || || || |||| || | ||| | || |||| || | ||||| || | Sbjct 62509 GCCTCGGTGATGATGGCGCGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAG 62568 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 ||||| |||| | ||| | ||||||||||| ||| | |||||||| || Sbjct 62569 AGGAGGCAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAG 62628 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAAT 10333 || ||||||||||| || || || |||||||| || Sbjct 62629 GTCAAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGAT 62669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610418908800