Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq597 113 5e-20 seq110 105 8e-18 seq79 89.7 6e-13 seq115 82.4 9e-11 >seq597 Length=589508 Score = 113 bits (124), Expect = 5e-20 Identities = 403/627 (64%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757 ||||| |||||| ||||| ||||| ||||| | || | || || || || Sbjct 282616 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 282557 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | ||||| | ||||| ||| | ||| || || || ||||||||||| ||||| || Sbjct 282556 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 282497 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 114877 ||||| | || |||| ||||| ||| || |||||||| | || || || | | Sbjct 282496 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 282437 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | || || ||| | || ||| |||||||| || || ||||| | |||| || || Sbjct 282436 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 282378 Query 114938 TTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 | |||| ||| | || | || || | || || || | ||| || || ||| Sbjct 282377 --AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 282320 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 115051 || |||| | ||| | ||| ||| ||||| || | ||| || | |||||| | Sbjct 282319 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 282260 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 | ||| |||| | || ||||| || || |||||| || || || | || Sbjct 282259 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 282200 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGAC 115171 || || ||||||| || ||||| ||| |||| | | || |||||||| ||| Sbjct 282199 AGGGTGTCGTAGATACCCTCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 282140 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 115231 | ||| || ||||| || |||||||| || || || | ||||| |||| || | Sbjct 282139 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAA-GTATTT 282081 Query 115232 -TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 115290 | ||||| | | ||| |||| | | | |||||| || |||||||| |||| Sbjct 282080 GTTAGACATGTAGTTGTACGTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 282021 Query 115291 CGAGACCCGCATAAACATGTATTGGGG 115317 | || ||||| | ||| | ||| || Sbjct 282020 TGCCACACGCATGATCATATGTTGTGG 281994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 || || || |||| || || |||| | |||||| ||| |||||| || || || Sbjct 282893 GCCATGGATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGATCTCA 282834 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 || |||| ||| || || |||||| ||||||||||| ||||| ||| ||| || Sbjct 282833 GTGCACAGATTGGAGCTACGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAA 282774 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTT 114648 ||||| |||||||||||| | || | || ||||| || |||| |||| ||||| || | Sbjct 282773 GCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGTA 282715 Query 114649 CCAGA 114653 ||||| Sbjct 282714 CCAGA 282710 >seq110 Length=125662 Score = 105 bits (116), Expect = 8e-18 Identities = 343/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCA-AGCTGATATTCTCCA 125816 ||| || || || ||||||||||| ||||| ||||| ||| | | || | || ||||||| Sbjct 62289 GTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGAT-ATGTTCTCCA 62347 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGA 125875 | || || || ||||| | ||| ||| ||| || |||| | | |||| Sbjct 62348 TGAAGTCGAAGGGGTTGACGGCGTTGTAAACC-TTGACATTGCCAAGCGCAAGCAAGAGA 62406 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | || |||| ||||||| |||| ||||||||| |||| | | Sbjct 62407 CGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTG 62466 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || | || || | ||| ||| |||||||| || || || | ||||||| Sbjct 62467 CACGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCG 62526 Query 125996 TGAATGGTGTCCACCCCAGG--TCTA-TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | | || || | ||| ||| ||| || | || ||| || |||||| Sbjct 62527 CGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGG--CA-GGCAAAG 62583 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| | |||||||| || ||||| ||||| || |||||| || || |||||| Sbjct 62584 TCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATG 62643 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 ||||| |||||||| | |||||| || | ||| | || ||||||||| ||||| Sbjct 62644 AGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATACCCTCG 62703 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCG-CGACTTTGTGTCAAA-CCAC 126229 ||| ||||| || | ||||||| ||||||| || | | | | | |||| |||| Sbjct 62704 ACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAGTTGTCATCG---CAAATCCAC 62760 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 |||| ||||| | ||||| || ||| || ||||| Sbjct 62761 TTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 62798 >seq79 Length=149343 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 160776 CAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCACACAGATTTCCAAA 160835 ||||||||| ||| ||||| ||| || | |||||||| | | |||| |||||| | Sbjct 99747 CAGACTACAGAGGCGAAGTAAAAATCATCCTCTTCAACTTCAGCGACACCGATTTCGCCA 99806 Query 160836 TCAAAAGGGGGGATCGCATCGCGCAACTCATCTTAGAGAGGTGCGAGACGCCCCAAGTTG 160895 ||||| ||||||||||| |||||| | ||| | |||||| | |||||| | |||| Sbjct 99807 TCAAAGAAGGGGATCGCATTGCGCAATTGATCGTTGAGAGGATATACACGCCCGACGTTG 99866 Query 160896 AAGAAATTGGCGCGGTTGAGGAGACCGAGAGAGGTTCGGGTGGATTTGG 160944 | ||| || | | |||| | | ||||||| | ||||| ||||| Sbjct 99867 TCGTGGTTGACGAGTTGGAGGCAAGTGTGAGAGGTGCCGGTGGGTTTGG 99915 >seq115 Length=121476 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT-TGATTTTCACGGGCAAC 11016 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 104028 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 104086 Query 11017 TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGC 11076 | || | |||||| || | | |||||||||||||||||| ||||| || | | Sbjct 104087 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 104146 Query 11077 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11135 | || ||| | || ||| || || ||||| || || | ||| |||||| || | Sbjct 104147 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 104205 Query 11136 TCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 |||| || || ||||| ||| | |||| |||||| || || ||| | |||||| Sbjct 104206 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 104261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345834403200