Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq264 116 4e-21 seq110 104 2e-17 seq520 82.4 7e-11 >seq264 Length=644297 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || ||||| |||| || ||| || ||| || Sbjct 590557 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGTCCATCTTC 590616 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| ||||| ||| |||| | ||||||||||| ||||| || || ||||||||| Sbjct 590617 CAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTG 590676 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| ||| ||||| |||| |||| |||||| | || ||||||| || | || | Sbjct 590677 GATCTTCGTCTTGACGTTG-TCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATAGTCT 590735 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| || || || || || || ||||| Sbjct 590736 TGCCGGTGAGGGTCTTCACGAAGATTTGCAT 590766 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || || || || || || ||||| ||| | Sbjct 590768 CCACCGCGGAGACGTAGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 590827 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| ||||||| |||||||| || || || Sbjct 590828 AAGGTGCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 590887 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 590888 ATACCCTCCTTGTCCTGGATCTTGGTCTTAACATTGTCGATAGTGTCTGATGACTCAACC 590947 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| ||| || || || |||||||| Sbjct 590948 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 590994 >seq110 Length=125662 Score = 104 bits (114), Expect = 2e-17 Identities = 334/511 (65%), Gaps = 7/511 (1%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| |||||| ||| | || ||| || Sbjct 62795 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 62736 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || ||| | |||| ||||| |||||||| |||||||| ||| |||| Sbjct 62735 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 62676 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | ||||||||| | || || |||||| Sbjct 62675 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 62616 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGA 47309 || ||||| | ||||| || |||||||| |||||||||| ||| || | ||| || Sbjct 62615 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCT-CAC-AGC 62558 Query 47310 GTCGATCAAAAG--TTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCA 47367 || | | ||| || | | || ||||| ||| ||| | |||| || || | Sbjct 62557 -TCAACAAGAAGCCTTCGCC-TGAAG-CCGTCCGCGCCATCATCACCGAGGCAGTACAAA 62501 Query 47368 TTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGA 47427 ||||| ||| || || ||| || | || || | || |||||| | Sbjct 62500 TTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACCC 62441 Query 47428 TGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCA 47487 | ||| | |||||||||| ||||| || || || || | || ||| || || Sbjct 62440 TCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGCGCTTGGCAATGTCA 62381 Query 47488 AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 || ||||| || ||| || || ||||| || ||| | ||||| || || | || |||| Sbjct 62380 AGGTTTACAACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGA 62321 Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||||||||||||||| || || Sbjct 62320 CTAACTTTTTCGAGAAGCGCGTCGGTGATTA 62290 >seq520 Length=276588 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| |||| || || || ||| || | || |||||||| |||| Sbjct 100395 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 100454 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||| || || || || || ||||||||||| ||| || ||||| | ||| Sbjct 100455 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 100514 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 100515 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAAA 100574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494618489600