Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq110 102 1e-16 seq115 87.8 2e-12 seq597 84.2 3e-11 >seq110 Length=125662 Score = 102 bits (112), Expect = 1e-16 Identities = 160/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| || ||||| ||||| || |||||| || || Sbjct 62578 GCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCG 62637 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 62638 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGATA 62697 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGT-ATC-- 127695 ||||| ||| ||||| || | |||||| ||||||| || | |||| ||| Sbjct 62698 CCCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCGC 62752 Query 127696 -AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 62753 AAATCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 62798 >seq115 Length=121476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/412 (66%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || || || || || || | ||| | ||| | ||||| | |||||| |||| Sbjct 103857 TCGAATCGTCCAGGCCGTAGCAAGGCCTTGTCCAATATATCGGGTCTGTTCGTACCCGCA 103916 Query 12765 ATGACAACGATGCCCGTCTCGT--TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 || || || | || || ||| | | ||| |||||||| ||||||| || || |||| Sbjct 103917 ATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCAGGATCTGGTTGA 103974 Query 12823 TGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACC----CGCACTGCGTTGCTTAC 12876 || ||| ||||||||||| | | | || | || || || | || | Sbjct 103975 GCGTGCTTTCCCGTTCATCATTTCCACCGCCAAAGTTGTTTTTCGATCT-CGAT--TTCC 104031 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCA 12935 | | |||||| ||||| |||||||||| ||| || ||| || | ||| | || | Sbjct 104032 CAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGTGGCG 104090 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | |||||| || | | |||||||||||||||||||||||| || | | | || Sbjct 104091 AACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGAGCCG 104150 Query 12996 -GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| | || ||| || || ||||| || || | ||| |||||| || ||||| Sbjct 104151 CTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCGTCTT 104209 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 104210 GCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 104261 >seq597 Length=589508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || || || |||| || || |||| | |||||| ||| |||||| || || || Sbjct 282893 GCCATGGATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGATCTCA 282834 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| ||| || || |||||| ||||||||||| ||||| ||| ||| || Sbjct 282833 GTGCACAGATTGGAGCTACGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAA 282774 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTT 116609 ||||| ||||| ||||| | || | || ||||| || |||| |||| ||||| || | Sbjct 282773 GCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGTA 282715 Query 116610 CCA 116612 ||| Sbjct 282714 CCA 282712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499224406400