Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq110 149 6e-31 seq264 116 4e-21 seq520 109 5e-19 >seq110 Length=125662 Score = 149 bits (164), Expect = 6e-31 Identities = 202/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || ||||| ||| || || | || || || | ||| ||||||||||||||||| ||| Sbjct 62903 GTCTCGATCAGGAGGGAGTATGTCTCGGAATGGATGTTTTCCATGGCGATTTGAAAACCG 62962 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 |||||||| || || || ||||| ||||| | ||||| |||| || || ||| Sbjct 62963 TAAAAGCATCGGGCTTCTGGAACCTGAACTTCGTTGCTAAAACGTTCGAGGAGGTTCTCG 63022 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||||||||| || || |||||||| || || | ||| ||||||| ||| ||| Sbjct 63023 TTGACGATGCCATCCGATGCTGCGAAAAATGCGAGAATGTGTGAGATGAAAAAGCGTTCG 63082 Query 133351 TTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 | |||||||| ||| | |||||| | ||| ||||| || || | ||| ||| || Sbjct 63083 TCGTCGTTCAGGCGGTTGTTCCAGTCTGGAACGTCTTTGGAGAGATCGATCTCTTCGGCG 63142 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 |||||||| || ||| || || |||||||| | ||| || Sbjct 63143 GTCCAAAATGAGGCCATTGCCTTCTTGTACATGCGCCAGAT 63183 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| |||||||| | || || ||||||||| ||| ||||| Sbjct 62574 GCAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAA 62633 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||||||| ||||| || |||||||| || || | || || ||| ||||| Sbjct 62634 GCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAA 62693 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || |||||||| || ||||| || || || ||| Sbjct 62694 GATACCCTCGACAGCTGCGAATGCGACGAGACGC 62727 >seq264 Length=644297 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || |||| || || || | Sbjct 590766 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 590707 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| || || ||||| | || | Sbjct 590706 GACACCATCGACAACG--TCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATC 590649 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||| |||| || | || || | | |||||||| Sbjct 590648 AGCAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGTTGAGCGACTACA 590589 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||| |||| |||||||| ||| | | |||||| Sbjct 590588 ACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGGC 590539 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| | | Sbjct 590994 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 590935 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| || |||| ||||| ||||| || || | ||||| Sbjct 590934 GACACTATCGACAATGTTAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 590875 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || || | |||||| | |||||||||| Sbjct 590874 CAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGATGGCCGCACCTTGTCCGACTACAAC 590815 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || ||||| || ||| Sbjct 590814 ATCCAGAAGGAATCCACTCTCCACTTGGTCCTACGT 590779 >seq520 Length=276588 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| ||||||||||| ||||||||| | || |||||| || | |||| | Sbjct 100573 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 100514 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||||||||| | ||||||||||| Sbjct 100513 GACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGAT 100456 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | || || || || |||| || | || ||| | | ||||||||||||||||| Sbjct 100455 TAATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAA 100396 Query 38431 AGG 38433 ||| Sbjct 100395 AGG 100393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166297753600