Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq597 176 6e-39 seq110 131 2e-25 seq115 96.9 4e-15 >seq597 Length=589508 Score = 176 bits (194), Expect = 6e-39 Identities = 417/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || |||| || || || || || ||||| |||| | Sbjct 281994 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCT 282053 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | |||| ||| || | ||||| |||| ||||| | || || || ||| Sbjct 282054 ATTCAGACGTACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCCACACTTTTC 282113 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || ||||| ||| ||| | || ||| ||||| |||| | |||||||| Sbjct 282114 AACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGAC 282173 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || |||| ||| |||| ||||| || |||||| |||||| Sbjct 282174 AGTATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGT 282233 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| | |||| ||| || |||||| || ||| |||| ||||| Sbjct 282234 GGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAAC 282293 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 282294 GGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTT 282353 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| || | |||| |||| || |||||||||||| Sbjct 282354 GATCAAGGTGGCAACAAGCGTC---CTGGTGCATTCGCCATCTACCTCGAGCCATGGCAC 282410 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | | | | || || | ||||| || | || || |||| |||| Sbjct 282411 GCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGC-GTGC 282469 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 282470 TCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAA 282529 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 |||| | ||| ||||| | || || || || || ||||| ||||| | ||||| Sbjct 282530 TGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGA 282589 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTA 112231 ||||| ||||| |||||| ||||| Sbjct 282590 CGAGTTCGAAGCTCTCTACGAGAAGTA 282616 Score = 168 bits (186), Expect = 8e-37 Identities = 694/1076 (64%), Gaps = 24/1076 (2%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGA 112336 ||| | || ||||| |||| | || ||||||||||| | || | |||||||||||||| Sbjct 282712 TGGTACGCCATTCTTCAAGCC-CAGACCGAGACTGGCAACCCTTTCATGCTTTACAAAGA 282770 Query 112337 CGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTG 112396 || || |||| ||||| ||||| ||||| ||||| || || ||||| || || Sbjct 282771 TGCTTGCAACCGCAAGAGCAATCAGAAGAACTTGGGAACCATTCGTAGCTCCAATCTGTG 282830 Query 112397 TACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 112456 || || ||| | || | | | |||||| ||||| || ||| | ||||| || Sbjct 282831 CACTGAGATCATTGAGTACTCTGCGCCTGATGAGGTCGCTGTTTGCAACTTGGCATCCAT 282890 Query 112457 CGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATTATGAAAAACTCCAC 112514 ||| | || | | || || | || | | | | | ||||| | || | ||| Sbjct 282891 GGCTTTGCCAACCTTCGTTGACGTTCAACG-CGGCGTC-TATGATTTCAACAAGTTGCAC 282948 Query 112515 GAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCC 112574 ||||| ||||||||| ||| | |||| | ||||| || |||||| Sbjct 282949 GAAGTCGTCCAAACTGTCATTCGCAACTTGAACAAGATCATTGACGTCAACCACTACCCC 283008 Query 112575 GTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGT 112634 ||| || || || | |||||||| | ||| | ||||| || ||| Sbjct 283009 GTTCCCGAAGCATACAACAGCAACTCCCGTCACCGTCCCGTCGGTGTTGGTGTACAGGGT 283068 Query 112635 CTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATC 112694 || ||||||| ||| || | ||||| | || || || ||| || ||| | | Sbjct 283069 CTTGCGGATGCTTTCCTTGCTCTTCGCCTGCCCTTCGAGTCTCCCGAGGCAAAGAAGCTT 283128 Query 112695 AATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGG--AGTTGG 112752 || | || || ||||| || || || ||||| ||||| | | | | || | | Sbjct 283129 AACATTCAAATCTTCGAGACCATTTACCATGCCGC-CTTGAC-CTCTTCCTGCAAGCTTG 283186 Query 112753 CAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTC 112812 || | | || || |||| |||||| ||||| ||||||| ||| || || | || | Sbjct 283187 CACAAGAAGAAGGCACATACAAAACCTACGAGGGCTCTCCAGTTTCCCAGGGTATTCTCC 283246 Query 112813 AATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGACGCTCTCAAGGAA 112871 | | || |||||| || || | || | | || || ||||||||| | ||||||| Sbjct 283247 AGTACGACATGTGG-AACGTCACTCCTACGGATCTCTGGGACTGGGACTCGCTCAAGGCT 283305 Query 112872 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCC 112931 |||||| || | ||| |||| ||| ||| | | || || |||||||| || ||| Sbjct 283306 GATATCAAGAAGCACGGTATTCGCAACTCACTTCTTGTTGCTCCTATGCCAACTGCTTCC 283365 Query 112932 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCT 112990 || | ||||| | ||| || || ||||| || || |||||| | || ||||| ||| Sbjct 283366 ACATCTCAAATTCTCGGTTTCAACGAGTGCTTCGAGCCATACACGTCAAATATCTACTCT 283425 Query 112991 GAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGACCTC 113048 | | || || || || || | |||||| ||| || | | || ||| Sbjct 283426 C-GTCGTGTGCTTGCTGGGGAATTCCAAGTCGTCAACC--CATGGCTGCTCAAAGATCTC 283482 Query 113049 AAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCC 113108 ||||| ||||| ||||| | | |||||| ||| || | || ||||||||| Sbjct 283483 GTCGAGATGGGTCTTTGGTCGGACAACATGAAGAATCGTATCATTGCAGAGGGTGGTTCT 283542 Query 113109 ATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAA 113168 || || || ||| ||||||| || || || ||| | ||| || ||||||||| Sbjct 283543 ATCCAGAACATTCCTAATATTCCCGACGATATCAAGGCCCTTTACAAGACGGTTTGGGAA 283602 Query 113169 ATCAAGATGAAGGATGTCATTGACA---TGGCCGCAGATCGTGGTCGCTTCATTGATCAA 113225 |||| || | |||| || |||| || |||||||| ||||||||||||| Sbjct 283603 ATCAGCC---AGCGTACCATTATCACCATGGCTGCGGATCGTGGCGCCTTCATTGATCAA 283659 Query 113226 AGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCAC 113285 ||| || |||| | |||| || || || ||| |||| | |||| |||||| Sbjct 283660 TCTCAGAGCTTGAACATTCACATGAAAGAGCCGACCATGGGCAAGATTACTTCGATGCAC 283719 Query 113286 ATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 113341 | ||||||||| ||||||||| || || ||||| ||||||||| | | ||| Sbjct 283720 TTTGCTGGTTGGAAGATGGGTCTCAAGACTGGAATGTACTACCTCCGAACCATGGC 283775 >seq110 Length=125662 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 62799 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 62740 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 62739 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 62683 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 62682 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 62624 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 62623 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 62578 >seq115 Length=121476 Score = 96.9 bits (106), Expect = 4e-15 Identities = 246/367 (67%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCA 15993 ||||| | || || || |||| |||||| ||| | | ||||||||||| || |||| Sbjct 103905 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 103962 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 | |||||| | || ||||||||||||||| | ||| ||| || || Sbjct 103963 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 104016 Query 16054 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 16103 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 104017 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 104076 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 104077 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 104135 Query 16164 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 104136 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 104194 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 16282 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 104195 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 104254 Query 16283 GGCGCCA 16289 || ||| Sbjct 104255 CGCACCA 104261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734330348800