Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq264 140 7e-28 seq520 104 5e-17 seq265 89.7 1e-12 >seq264 Length=644297 Score = 140 bits (154), Expect = 7e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || | || |||| ||||| ||| Sbjct 591014 ACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCCTCG 591073 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || |||||||| || || || || ||||||||| Sbjct 591074 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 591133 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| | || || |||||||| | ||||||| Sbjct 591134 ATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTT 591193 Query 195112 CCTGTCA 195118 || |||| Sbjct 591194 CCGGTCA 591200 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| ||| | || | |||||||| | |||||| || Sbjct 590570 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGTCCATCTTCCAACTGCTTTCCG 590629 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || || ||||||||||| ||||| ||||| || || || |||| Sbjct 590630 GCGAAGATGAGGCGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCGTCTTG 590689 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||||||| || ||| ||||| || |||| ||||| || || | || Sbjct 590690 ACGTTGTCGATGGTGTCAGAGGATTCAACTTCGAGTGTAATAGTCTTGCCGGTGAGGGTC 590749 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 590750 TTCACGAAGATTTGCAT 590766 >seq520 Length=276588 Score = 104 bits (114), Expect = 5e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||||| ||| | | | ||||| || ||||| ||| |||| || | ||||| || | | Sbjct 100380 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAAG-GTACGTCCATCCTCCAATT 100437 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| | ||| ||||||||||| ||||| || || |||||||| || | Sbjct 100438 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 100497 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||| || || || ||||| || || || |||||||| | ||||| || | Sbjct 100498 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 100557 Query 195116 TCAAAGTTTTTACGAA 195131 | | ||||| ||||| Sbjct 100558 TGAGGGTTTTGACGAA 100573 >seq265 Length=369171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || || | ||||||||| Sbjct 48756 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGTGCGTCCATCTTCG 48815 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| | || || |||||||| || || ||||| |||||| Sbjct 48816 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 48872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466816157680