Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq597 138 2e-27 seq110 123 5e-23 >seq597 Length=589508 Score = 138 bits (152), Expect = 2e-27 Identities = 475/733 (65%), Gaps = 12/733 (2%) Strand=Plus/Minus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| |||||||| ||| | || || || ||| | || Sbjct 282608 GTAGAGAGCTT--CGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGG 282551 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| ||| |||||| || | || ||| | || |||||| ||||| || |||||| Sbjct 282550 CACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCAC 282491 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 | || | || ||||| | | ||| || || ||||| ||| || |||||||| Sbjct 282490 AAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCT 282431 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 || | | || | || |||||||| ||||| || |||| ||| | || || || ||| Sbjct 282430 AACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGC 282371 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||| ||||| || | | |||| |||| || || | || || Sbjct 282370 TTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACA 282311 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 || ||||| ||| ||||| || || |||||| | || ||| | | | | || Sbjct 282310 AGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGA-TG 282252 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | |||||||||||| ||| || || ||||| || || ||||||| ||||| Sbjct 282251 TATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTC 282192 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| ||| ||||||||| || | || || |||||||| | || | Sbjct 282191 GTAGATACCCTCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGG 282132 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 || | | | ||||| || || ||||| |||||| || ||||| ||||||| Sbjct 282131 TTGAGGTGTGCCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAAGTATTTGTTAGACAT 282072 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATC 222539 | |||||||| | | | |||| || |||||||| | | || | || | Sbjct 282071 GTAGTTGTACGTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACA-C 282013 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACG 222596 |||| ||| | || || | || ||| ||||| || | ||| ||||| | Sbjct 282012 GCATGATCATATGTTGTGGACGCT---CAGCGACCTTGCCGCTTATTCGGAGTAGGTATG 281956 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || ||||| |||||||| |||||||| | | | || |||||| ||| || | || Sbjct 281955 ATCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGG 281896 Query 222657 CGGCGTCCAGCTC 222669 | | || || ||| Sbjct 281895 CAGAGTTCAACTC 281883 >seq110 Length=125662 Score = 123 bits (136), Expect = 5e-23 Identities = 337/519 (65%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||| | |||||| ||||| |||||||||| | | | | |||| Sbjct 62795 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 62736 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| || || || || || ||||| ||||| ||||| |||||||| | ||| Sbjct 62735 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 62676 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | ||||||||||||||| || || ||||||||| || ||| |||||||| Sbjct 62675 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 62616 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 || ||| | |||||||| | |||| || ||||||||||| |||| | ||| Sbjct 62615 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTC-----TCAC 62561 Query 26050 TTGCTCCAC---AAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 |||| || || ||||| | || ||||| | ||||||| ||||| || | Sbjct 62560 -AGCTCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAA 62502 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 || ||| |||| || | ||||||||| | Sbjct 62501 ATTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACC 62442 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCG 26224 |||||| |||| ||||| |||| ||| || || | ||| || ||| ||| || | Sbjct 62441 CTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC--GCTTGGCAATG 62384 Query 26225 CCAGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | |||| ||||| ||||| |||||||| ||||| |||||||| | | || Sbjct 62383 TCAAGGTTTACA--ACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGG 62326 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||| || || ||| | ||||| || || || Sbjct 62325 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTACCA 62287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832725017600