Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17]
1,040 sequences; 62,487,368 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq597 138 2e-27
seq110 123 5e-23
>seq597
Length=589508
Score = 138 bits (152), Expect = 2e-27
Identities = 475/733 (65%), Gaps = 12/733 (2%)
Strand=Plus/Minus
Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001
||| ||||| | | |||| |||||||| ||| | || || || ||| | ||
Sbjct 282608 GTAGAGAGCTT--CGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGG 282551
Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061
||||| ||| |||||| || | || ||| | || |||||| ||||| || ||||||
Sbjct 282550 CACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCAC 282491
Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121
| || | || ||||| | | ||| || || ||||| ||| || ||||||||
Sbjct 282490 AAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCT 282431
Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181
|| | | || | || |||||||| ||||| || |||| ||| | || || || |||
Sbjct 282430 AACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGC 282371
Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241
||||||||||| ||||| || | | |||| |||| || || | || ||
Sbjct 282370 TTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACA 282311
Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301
|| ||||| ||| ||||| || || |||||| | || ||| | | | | ||
Sbjct 282310 AGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGA-TG 282252
Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360
| | |||||||||||| ||| || || ||||| || || ||||||| |||||
Sbjct 282251 TATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTC 282192
Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420
||| ||||| ||| ||||||||| || | || || |||||||| | || |
Sbjct 282191 GTAGATACCCTCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGG 282132
Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480
|| | | | ||||| || || ||||| |||||| || ||||| |||||||
Sbjct 282131 TTGAGGTGTGCCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAAGTATTTGTTAGACAT 282072
Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATC 222539
| |||||||| | | | |||| || |||||||| | | || | || |
Sbjct 282071 GTAGTTGTACGTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACA-C 282013
Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACG 222596
|||| ||| | || || | || ||| ||||| || | ||| ||||| |
Sbjct 282012 GCATGATCATATGTTGTGGACGCT---CAGCGACCTTGCCGCTTATTCGGAGTAGGTATG 281956
Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656
|| ||||| |||||||| |||||||| | | | || |||||| ||| || | ||
Sbjct 281955 ATCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGG 281896
Query 222657 CGGCGTCCAGCTC 222669
| | || || |||
Sbjct 281895 CAGAGTTCAACTC 281883
>seq110
Length=125662
Score = 123 bits (136), Expect = 5e-23
Identities = 337/519 (65%), Gaps = 17/519 (3%)
Strand=Plus/Minus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| ||||| | |||||| ||||| |||||||||| | | | | ||||
Sbjct 62795 CCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTCTACC 62736
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|||| ||| || || || || || ||||| ||||| ||||| |||||||| | |||
Sbjct 62735 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 62676
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| | ||||||||||||||| || || ||||||||| || ||| ||||||||
Sbjct 62675 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 62616
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|| ||| | |||||||| | |||| || ||||||||||| |||| | |||
Sbjct 62615 CTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGCCTCCTCTTC-----TCAC 62561
Query 26050 TTGCTCCAC---AAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106
|||| || || ||||| | || ||||| | ||||||| ||||| || |
Sbjct 62560 -AGCTCAACAAGAAGCCTTCGCCTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAA 62502
Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166
|| ||| |||| || | ||||||||| |
Sbjct 62501 ATTGAGCAGGAATTCTTGAGCGAAGCATTACCGTGCAGATTGCTCGGCATGAACTCTACC 62442
Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCG 26224
|||||| |||| ||||| |||| ||| || || | ||| || ||| ||| || |
Sbjct 62441 CTCATGTGCCAGTACATCGAGTTTGTTGCTGATCGTCTCTTGCTTGC--GCTTGGCAATG 62384
Query 26225 CCAGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282
|| | |||| ||||| ||||| |||||||| ||||| |||||||| | | ||
Sbjct 62383 TCAAGGTTTACA--ACGCCGTCAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGG 62326
Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||| ||||| || || ||| | ||||| || || ||
Sbjct 62325 AAAGACTAACTTTTTCGAGAAGCGCGTCGGTGATTACCA 62287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928832725017600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |