Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq111 129 7e-24 seq597 122 1e-21 seq110 114 2e-19 seq942 105 8e-17 >seq111 Length=124556 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||||||||| |||||| | || |||||| | || |||||| | || ||||| Sbjct 88220 GCCGCCAACTACCTCGATATCAAGGCCCTTCTCGATGTCGGCTGCAAGACCGTTGCCAAT 88161 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| || |||||||||||||| ||||| |||||| || Sbjct 88160 ATGATCAAGGGCAAGTCCCCAGAGGAGATCCGCAAAACCTTCAACATCCAG 88110 >seq597 Length=589508 Score = 122 bits (134), Expect = 1e-21 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || |||||||| || || ||| |||||| |||||||| || || || ||||| || Sbjct 282358 TGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGAT 282299 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| || || | | ||| | || | ||| || | || | || |||| Sbjct 282298 GTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGATGTATGTTAAGGCCG 282239 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || | ||| || || | || || ||||| ||||||||||| |||||| Sbjct 282238 ATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCG 282179 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| ||||| |||| | ||| ||||| |||||| |||||| || | ||||| Sbjct 282178 ATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCT 282119 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 |||||||| || ||||| Sbjct 282118 GCGTTGAAAAGTGTGGG 282102 >seq110 Length=125662 Score = 114 bits (126), Expect = 2e-19 Identities = 222/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||||||||| ||||| || | || || || Sbjct 62281 GCCTTCTGGTAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATG 62340 Query 868751 AACTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCG-AC 868807 |||||| | ||| |||||| ||||| |||| ||| | || |||| | Sbjct 62341 TTCTCCATGAAGTCGAAGGGGTTGACGGCGT--TGTAAACCTTGACATTGCCAAGCGCAA 62398 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 || || || || || || ||||||||||||||||||||||||||| | |||||||||| Sbjct 62399 GCAAG-AGACGATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCG 62457 Query 868868 A-TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 | | | || ||| | | ||||||| || || | ||| || | || |||||| Sbjct 62458 AGCAATCTGCA-CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGT 62516 Query 868927 GATGATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||||| || || | | || | ||| ||||| ||| |||| | | |||| |||| Sbjct 62517 GATGAT-GGCGCGGACGGCTTCAGGCGAAGGCTTCTTGTTGAGCTGTGAGAAGAGGAGGC 62575 Query 868986 AGGCAAAGTCGCAGTGCA 869003 ||||||||||| ||||| Sbjct 62576 AGGCAAAGTCGGTGTGCA 62593 Score = 107 bits (118), Expect = 2e-17 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | ||||||| |||| | |||||||||||| ||||||||| Sbjct 62596 CCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTTC 62655 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||| | ||| || ||| ||| ||||| |||||||| || || || Sbjct 62656 TTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGACAGCTGCGAA 62714 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| ||| |||||| || || | || | | |||||||||| ||||| Sbjct 62715 TGCGACGAGACGCGATGCAAAG--GTAGA-GTTGTCATCGCAAATCCACTTCAGTGCCCA 62771 Query 869359 GTCGGCCTTTTT 869370 ||||||||| || Sbjct 62772 GTCGGCCTTCTT 62783 >seq942 Length=213378 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||| || || ||||| || || || |||| ||| || || ||| Sbjct 133579 GACAGCATTGGTGGCACAGTCACCTGCGTTCTGCGTAATGTACCGGTAGGACTGGGAGAG 133520 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||||||||| | |||||| ||| || ||||||||||| ||||| ||| | || Sbjct 133519 CCTTGCTTTGACAAATTGGAGGCCAAGCTTGCACACGCCATGCTCTCGATACCGTCGACG 133460 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 || |||||||| || ||| ||||| Sbjct 133459 AAAGGATTCGAAATCGGCTCTGGGTT 133434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107053852729680