Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17]
1,040 sequences; 62,487,368 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq597 111 1e-19
seq264 87.8 2e-12
>seq597
Length=589508
Score = 111 bits (122), Expect = 1e-19
Identities = 454/707 (64%), Gaps = 9/707 (1%)
Strand=Plus/Minus
Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765
|| |||||||| |||||| ||||||||| || || |||| || || ||||| || | |
Sbjct 282598 TCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTC 282539
Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825
|| | | | | | ||||| ||| ||||| || || | ||||| || || | |
Sbjct 282538 CAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAA 282479
Query 147826 AGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATA 147884
||||| || || || || ||| ||| | ||| || ||| || | | |
Sbjct 282478 AGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCA-GTTGAA 282420
Query 147885 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCC 147941
|| ||||||||||| || || | ||||| ||| | ||||| |||||| || ||
Sbjct 282419 GACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCACC 282360
Query 147942 CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGC 148001
|| || || | ||| | | || ||| || || | ||| || | || ||| |||
Sbjct 282359 TTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGA 282300
Query 148002 AGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACG 148059
|||||||| || || | || | | | || |||| | | || || | ||||| |
Sbjct 282299 TGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGG-CTCGGA-TGCGATGTATGTTAAGG 282242
Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119
|| || || || || |||||| || ||| ||| | || |||||| ||
Sbjct 282241 CCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCC 282182
Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179
||||| ||||| | || | ||| | || || || | | |||||| | ||
Sbjct 282181 TCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTG 282122
Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239
|| || |||||| ||||| |||||||| || |||| | | ||| | |||
Sbjct 282121 CCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAGTTGTAC 282062
Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299
|||| |||||| ||| ||||| || ||||||||||| | || || ||||||| |||
Sbjct 282061 GTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGATCATA 282002
Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTT 148359
|| ||||| || || || || | | | || ||| || ||| || |||||
Sbjct 282001 TGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGGAGTAGGTATGATCGCTCCAGGGTC 281942
Query 148360 TTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
||| | |||||||| | ||||| |||||| ||||| | |||||
Sbjct 281941 TTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTATACAATGGC 281895
>seq264
Length=644297
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | | | ||||| || || |||||||||||||||| ||||| ||||||
Sbjct 590558 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGTCCATCTTCC 590617
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
| ||| || |||| |||| || ||||| ||||||||||| || ||||| || ||
Sbjct 590618 AACTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGAGGAATACCTTCCTTGTC 590673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605004054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |