Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq597 176 6e-39 seq110 96.9 4e-15 seq475 93.3 5e-14 >seq597 Length=589508 Score = 176 bits (194), Expect = 6e-39 Identities = 417/627 (67%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 ||||| |||||| ||||| ||||| ||||| |||| ||||| || || | Sbjct 282616 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 282557 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | |||| ||| | ||| | || || ||||||||||| ||||| ||| Sbjct 282556 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 282497 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||||||| || | || ||||| | | || || ||||| | || ||||| || Sbjct 282496 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 282437 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || | | | | || ||| |||||||||||||| || |||| |||| || | Sbjct 282436 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGA---ATGCA 282380 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| |||||| || ||||| || || |||| ||| || || ||| Sbjct 282379 CCAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 282320 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || |||| || ||| | ||| || ||||| || | ||| ||| | |||||| Sbjct 282319 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 282260 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | ||| |||| | || ||||| ||||| |||||| || ||||| | | Sbjct 282259 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 282200 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | |||||||| | ||| ||||||||| || | || ||||||||| || Sbjct 282199 AGGGTGTCGTAGATACCCTCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 282140 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | |||||| ||||| || || ||||| || || || | ||||| |||| || | Sbjct 282139 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAA-GTATTT 282081 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | ||||| | || ||| |||| | |||| |||||||| || ||||| ||||||| Sbjct 282080 GTTAGACATGTAGTTGTACGTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 282021 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||| || ||||||| ||| | ||||| Sbjct 282020 TGCCACACGCATGATCATATGTTGTGG 281994 Score = 114 bits (126), Expect = 2e-20 Identities = 681/1076 (63%), Gaps = 24/1076 (2%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | |||||| |||||||| || |||||||| || ||||| | | ||| Sbjct 283775 GCCATGGTTCGGAGGTAGTACATTCCAGTCTTGAGACCCATCTTCCAACCAGCAAAGTGC 283716 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 || |||| | |||| ||| || || || |||| | ||||| || ||| ||| Sbjct 283715 ATCGAAGTAATCTTGCCCATGGTCGGCTCTTTCATGTGAATGTTCAAGCTCTGAGATTGA 283656 Query 110474 TCAATGAAGCGCCCCCGTTGTGCCGCCAT----ATCAATGACATCCTTCATCTTAATTTC 110529 ||||||||| || || | || ||||| || |||| | || | ||||| Sbjct 283655 TCAATGAAGGCGCCACGATCCGCAGCCATGGTGAT-AATGGTACGCTGGCTG---ATTTC 283600 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || || || ||||||||| || || |||| | || |||||||| || Sbjct 283599 CCAAACCGTCTTGTAAAGGGCCTTGATATCGTCGGGAATATTAGGAATGTTCTGGATAGA 283540 Query 110590 ACCCCCCGCCTTCACCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 ||| ||| | | || |||| ||| |||||| | | ||||| ||||| |||| Sbjct 283539 ACCACCCTC-TGCA--ATGATACGATTCTTCATGTTGTCCGACCAAAGACCCATCTCGAC 283483 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 ||| || |||| || |||||| | || || || || || | | Sbjct 283482 GAGATCTTTGAGCAGCCATGGGTTGACGACTTGGAATTCCCCAGCAAGCACACGACGAGA 283423 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| |||| |||||||| || ||||| || || ||| | ||||| | ||||| Sbjct 283422 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 283363 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||| || || | | ||| ||| |||| ||| | || |||||| | Sbjct 283362 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 283303 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| |||||||| || || | | || | || |||| ||||||| |||| Sbjct 283302 CTTGAGCGAGTCCCAGTCCCAGA-GATCCGTAGGAGTGACGTTCC-ACATGTCGTACTGG 283245 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| | ||||| ||||| |||||| || | |||| ||| || Sbjct 283244 AGAATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATGTGCCTTCTTCTTGTGCA 283185 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | | ||| | || || || || || ||||| || ||||| || || | | Sbjct 283184 AGCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTAAGC 283125 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACC 111063 | ||| || || || || || | | || | | | || || ||||||| ||||| Sbjct 283124 TTCTTTGCCTCGGGAGACTCGAAGG-GCAGGCGAAGAGCAAGGAAAGCATCCGCAAGACC 283066 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 || ||||| | ||| | || | ||| || || || || |||||| Sbjct 283065 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTTGTATGCTTCGGGAACGGG 283006 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 || || |||||||| ||| | || | ||| | | || ||| || Sbjct 283005 GTAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTTTGGACGACTTCGTG 282946 Query 111184 -AAGTTTTTCATAATCAAAAGTGC-GAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 || || || | ||||| | || | || | | | || | |||| | || || Sbjct 282945 CAACTTGTTGA-AATCATAGACGCCGCGT-TGAACGTCAACGAAGGTTGGCAAAGCCATG 282888 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 |||||||| ||||||||||| |||||| | | |||||| | || || || || Sbjct 282887 GATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTGCAC 282828 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||||| || ||| || ||||| ||||| || || ||||| |||||| ||||| Sbjct 282827 AGATTGGAGCTACGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGCATCT 282768 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| |||||| | || | || ||||| ||||| | || ||||| || | ||| Sbjct 282767 TTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCTTGAAGAATGGCGTACCA 282712 >seq110 Length=125662 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/501 (65%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| || ||||| ||||| || |||| ||||| ||||| Sbjct 62290 TAATCACCGACGCGCTTCTCGAAAAAGTTAGTCTTTCCGGCAAGAGATATGTTCTCCATG 62349 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTG-AGGAGACG 122489 ||||| || || || ||||| ||| || || | | | | | |||||| Sbjct 62350 AAGTCGAAGGGGTTGACGGCGTTGTAAACCT-TGACATTGCCAAGCGCAAGCAAGAGACG 62408 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | ||| |||| ||||||| | |||| ||||||||| |||| | | || Sbjct 62409 ATCAGCAACAAACTCGATGTACTGGCACATGAGGGTAGAGTTCATGCCGAGCAATCTGCA 62468 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || | ||| || | ||| | | |||||| | || ||||| | | ||||||| | Sbjct 62469 CGGTAATGCTTCGCTCAAGAATTCCTGCTCAATTTGTACTGCCTCGGTGATGATGGCGCG 62528 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGCAAACTCC 122667 || | ||| | | || | || | || ||| |||| |||||| || Sbjct 62529 GACGGCTTCAGGCGAAGGCTTCTT--GTTGAGCTGTGAGAAGAGGAGGCAGGCAAAGTCG 62586 Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727 ||| | ||||| || || || |||||||| || |||||| | || ||||||||| Sbjct 62587 GTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCCGGGCATGAGA 62646 Query 122728 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | ||| | |||| ||| || | ||| ||||||||||||||| || Sbjct 62647 CCGCGCTTCTTGAGCCAGAAGATAGATGCA-AAGGCGCCGCTGAAGAAGATACCCTCGAC 62705 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTT 122843 | || || || | || || || |||| ||| || |||| || ||| || Sbjct 62706 AGCTGCGAATGCGACGAGACGCGATGCAAAGG---TAGAGTTGTCATCGCAAATCCACTT 62762 Query 122844 CATTGCCCATTTCGCCTTCTT 122864 || |||||| | |||||||| Sbjct 62763 CAGTGCCCAGTCGGCCTTCTT 62783 >seq475 Length=293815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 223/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 182520 CCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGA 182579 |||||||| || |||||||| | ||| ||| ||||| ||||| | | ||||||| || Sbjct 181487 CCCTTGATATGGGAACCATCGTGATCCTGATCCGTCATGATCATCAAATGACCATATCGC 181428 Query 182580 AGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGAT 182637 | | | || ||| || || ||||| || || || | || |||||||| | Sbjct 181427 AATCCTTTCGTGTCAGTGTACTCCTT--CTTGTGCTGCAGGCCCATGAACTTCTTGATGT 181370 Query 182638 CATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATT 182697 | || ||| ||| | || || ||||| | |||||| || || || ||| Sbjct 181369 TCTGGATCTCAGCGTTGTTGGAAATTTGGGCCACGGTAGCGTCTCGCACGTTGAGCAATT 181310 Query 182698 TACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCG 182757 |||| ||||| ||||| |||||| |||| || || || | | || |||| | Sbjct 181309 TACCACGAAGCGGGAAAACACCGATCAAATCAGGATTGACCACCGCACGCCCAGCAAGAG 181250 Query 182758 CGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGC-- 182815 | || | || || |||||||| |||| |||||||||||| ||||||| || | Sbjct 181249 CAAGACCACTGGCAGAGTCACCCTCAGTGAGAATGAGAGTACA-TTTCCAG-CCGTCCTT 181192 Query 182816 CGTACCCGCCTTGTTCGCGTCATCCAACTTGG 182847 |||||||||||||| || || |||||||| Sbjct 181191 AGTACCCGCCTTGTTGGCATCCGTCAACTTGG 181160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023835584000