Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq597 131 2e-25 seq110 107 2e-18 seq115 87.8 2e-12 >seq597 Length=589508 Score = 131 bits (144), Expect = 2e-25 Identities = 407/627 (65%), Gaps = 11/627 (2%) Strand=Plus/Minus Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| |||||| ||||| ||||| ||||| | || | || || || || Sbjct 282616 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 282557 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||||| ||| | ||| || || || ||||||||||| ||||| || Sbjct 282556 TGAGGGCACATGAGAGTCCAGTCGCCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGA 282497 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 ||||| | || |||| ||||| ||| || |||||||| | || || || | | Sbjct 282496 ATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTC 282437 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || || ||| | || ||| |||||||| || || ||||| | |||| || || Sbjct 282436 AGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACC- 282378 Query 119178 TTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | |||| ||| | || | || || | ||||| |||| ||| ||||| ||| Sbjct 282377 --AGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGC 282320 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTG 119291 || |||| | ||| | ||| ||| ||||| || | ||| || | |||||| | Sbjct 282319 ATAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGG 282260 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | || |||| | || ||||| || || |||||| || || || | || Sbjct 282259 ATGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTG 282200 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| || ||||| ||| |||| | | ||||||||||| ||| Sbjct 282199 AGGGTGTCGTAGATACCCTCGATACTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAG 282140 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | ||| || ||||| || |||||||| || || || | ||||| |||| || | Sbjct 282139 AGTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTGGGGGAGGCGTGCGTGAA-GTATTT 282081 Query 119472 -TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | ||||| | || ||| |||| | | | |||||| || |||||||| |||| Sbjct 282080 GTTAGACATGTAGTTGTACGTCTGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGAC 282021 Query 119531 CGAGACCCGCATAAACATGTATTGGGG 119557 | || ||||| | ||| | ||| || Sbjct 282020 TGCCACACGCATGATCATATGTTGTGG 281994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || || || |||| || || |||| | |||||| ||| |||||| || || || Sbjct 282893 GCCATGGATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGATCTCA 282834 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||| || || || |||||| ||||||||||| ||||| ||| ||| || Sbjct 282833 GTGCACAGATTGGAGCTACGAATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAA 282774 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTT 118888 ||||| |||||||||||| | || | || ||||| || |||| |||| ||||| || | Sbjct 282773 GCATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGTA 282715 Query 118889 CCAGA 118893 ||||| Sbjct 282714 CCAGA 282710 >seq110 Length=125662 Score = 107 bits (118), Expect = 2e-18 Identities = 162/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | |||||||| || ||||| ||||| || |||||| || || Sbjct 62577 GGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATAAGTTCGTTGGAGAAGGTCAAGCC 62636 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 62637 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATAGATGCAAAGGCGCCGCTGAAGAAGAT 62696 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGT-ATC- 130191 ||||| ||| ||||| || | ||||||| ||||||| || | |||| ||| Sbjct 62697 ACCCTCGACAGCTGCGAATGCGACGAGACGCGATGCAAAGGTAGAG-----TTGTCATCG 62751 Query 130192 --AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 62752 CAAATCCACTTCAGTGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAC 62798 >seq115 Length=121476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAAC 14292 || || | |||||| |||||||| ||||||| ||| || ||| || | ||| | || Sbjct 104028 TTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCTTC-CTCGCGGT 104086 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | || | |||||| || | | |||||||||||||||||||||||| || | | Sbjct 104087 GGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCCACGAACTCAGA 104146 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | || ||| | || ||| || || |||||| || || | ||| |||||| || | Sbjct 104147 GCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTTGGCGAGCAGCG 104205 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| || || || || ||| | |||| |||||| || || ||| | |||||| Sbjct 104206 TCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTTCGCACCA 104261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427160342400