Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq597 257 2e-63 seq110 131 2e-25 seq115 87.8 2e-12 >seq597 Length=589508 Score = 257 bits (284), Expect = 2e-63 Identities = 1148/1799 (64%), Gaps = 86/1799 (5%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| ||||| |||| ||||| || || |||||||| |||| Sbjct 281994 CCACAACATATGATCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATTGAATCTGCT 282053 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | |||| ||| || | ||||| | | || |||| ||||| | || || || || Sbjct 282054 ATTCAGACGTACAACTACATGTCTAACAAATAC-TTCACGCACGCCTCCCCCACACTTTT 282112 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| ||| ||| | || ||||||||| || | || |||||||| Sbjct 282113 CAACGCAGGCACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGA 282172 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| || |||||| ||||| Sbjct 282173 CAGTATCGAGGGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGG 282232 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | |||| ||| | |||||| | ||| ||| | || ||||| Sbjct 282233 TGGTATCGGCCTTAACATACATCGCATCCGAGCCACTGGATCATACATTGGAGGAACAAA 282292 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | ||| || |||| ||||| || || ||| |||| || || ||||| || Sbjct 282293 CGGCACATCGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGT 282352 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| ||| ||||| | || |||| |||| || ||||||||||| Sbjct 282353 TGATCAAGGTGGCAACAAGCGTCCTGGTGCAT---TCGCCATCTACCTCGAGCCATGGCA 282409 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| || | | | | || || | ||||| || | || || ||||| || Sbjct 282410 CGCCGATGTCTTCAACTGGTTAGATCTGAGAAAGAACCACGGCAAAGAAGAAGCGCG-TG 282468 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || ||||| |||| || | |||||||| || || ||||||||| | || || ||| Sbjct 282469 CTCGTGATCTTTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGA 282528 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC---------TCTCCGATG 104804 |||| | ||| ||||| | || || || || ||||||| ||| || || Sbjct 282529 ATGGCGACTGGACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTG 282588 Query 104805 CCGTG------GGT------GAGGAGT---TTG-----AAGCCCTTTAC----------A 104834 || | | | ||| ||| ||| ||| ||| || | Sbjct 282589 ACGAGTTCGAAGCTCTCTACGAGAAGTAAGTTGCCCCGAAGTGCTTGACTACCGCCAATA 282648 Query 104835 CAAA----------GTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 104884 | || ||||||| ||||||| || | || || | | || | Sbjct 282649 CTAACCGCTCCCAGGTACGAGAAAGAAGGCCGTGGCCGTGAAACTATCCGCGCCCAAAAG 282708 Query 104885 GTGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAA 104943 | ||| | || ||||| |||| | || ||||||||||| | || | |||||||||||| Sbjct 282709 CTCTGGTACGCCATTCTTCAAGCC-CAGACCGAGACTGGCAACCCTTTCATGCTTTACAA 282767 Query 104944 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCT 105003 ||| || || |||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 282768 AGATGCTTGCAACCGCAAGAGCAATCAGAAGAACTTGGGAACCATTCGTAGCTCCAATCT 282827 Query 105004 CTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 || || || ||| | || | | | |||||| ||||| || ||| | ||||| Sbjct 282828 GTGCACTGAGATCATTGAGTACTCTGCGCCTGATGAGGTCGCTGTTTGCAACTTGGCATC 282887 Query 105064 AATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121 || ||| | || | | || || | || | | | | | ||||| | || | Sbjct 282888 CATGGCTTTGCCAACCTTCGTTGACGTTCAACG-CGGCGTC-TATGATTTCAACAAGTTG 282945 Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181 |||||||| ||||||||| ||| | |||| | ||||| || ||| Sbjct 282946 CACGAAGTCGTCCAAACTGTCATTCGCAACTTGAACAAGATCATTGACGTCAACCACTAC 283005 Query 105182 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 |||||| || || || | |||||||| | ||| | ||||| ||| Sbjct 283006 CCCGTTCCCGAAGCATACAACAGCAACTCCCGTCACCGTCCCGTCGGTGTTGGTGTACAG 283065 Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 ||||| ||||||| ||| || | ||||| | || || || ||| || ||| | Sbjct 283066 GGTCTTGCGGATGCTTTCCTTGCTCTTCGCCTGCCCTTCGAGTCTCCCGAGGCAAAGAAG 283125 Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAG--AGT 105359 | || | || || |||||||| || || ||||| ||||| | | | | || Sbjct 283126 CTTAACATTCAAATCTTCGAGACCATTTACCATGCCGC-CTTGAC-CTCTTCCTGCAAGC 283183 Query 105360 TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGC 105419 | ||| | | || || |||| |||||| ||||| ||||||| ||| || || | | Sbjct 283184 TTGCACAAGAAGAAGGCACATACAAAACCTACGAGGGCTCTCCAGTTTCCCAGGGTATTC 283243 Query 105420 TTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAG 105478 | || | || |||||| || || | || | | || || |||||||| | |||||| Sbjct 283244 TCCAGTACGACATGTGG-AACGTCACTCCTACGGATCTCTGGGACTGGGACTCGCTCAAG 283302 Query 105479 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCC 105538 | |||||| || | ||| |||| ||| || || | ||||| |||||||| || Sbjct 283303 GCTGATATCAAGAAGCACGGTATTCGCAACTCACTTCTTGTTGCTCCTATGCCAACTGCT 283362 Query 105539 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA- 105597 ||||| | ||||| | ||| || || ||||| || || |||||| | || ||||| Sbjct 283363 TCCACATCTCAAATTCTCGGTTTCAACGAGTGCTTCGAGCCATACACGTCAAATATCTAC 283422 Query 105598 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGAC 105655 ||| | | || || || || || | |||||| ||| || | | || Sbjct 283423 TCTC-GTCGTGTGCTTGCTGGGGAATTCCAAGTCGTCAACC--CATGGCTGCTCAAAGAT 283479 Query 105656 CTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGT 105715 ||| ||||| ||||| ||||| | | |||||| ||| || | || ||||||| Sbjct 283480 CTCGTCGAGATGGGTCTTTGGTCGGACAACATGAAGAATCGTATCATTGCAGAGGGTGGT 283539 Query 105716 TCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGG 105775 || || || || ||| ||||||| | || || ||| | ||| || |||||| Sbjct 283540 TCTATCCAGAACATTCCTAATATTCCCGACGATATCAAGGCCCTTTACAAGACGGTTTGG 283599 Query 105776 GAAATCAAGATGAAGGATGTCATTGACA---TGGCCGCAGATCGTGGTCGCTTCATTGAT 105832 ||||||| || | |||| || |||| || |||||||| |||||||||| Sbjct 283600 GAAATCAGCC---AGCGTACCATTATCACCATGGCTGCGGATCGTGGCGCCTTCATTGAT 283656 Query 105833 CAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATG 105892 ||| ||| || |||| | |||| || || || ||| |||| | |||| ||| Sbjct 283657 CAATCTCAGAGCTTGAACATTCACATGAAAGAGCCGACCATGGGCAAGATTACTTCGATG 283716 Query 105893 CACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 ||| | ||||||||| ||||||||| || || ||||| ||||||||| | | ||| Sbjct 283717 CACTTTGCTGGTTGGAAGATGGGTCTCAAGACTGGAATGTACTACCTCCGAACCATGGC 283775 >seq110 Length=125662 Score = 131 bits (144), Expect = 2e-25 Identities = 167/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || || | ||||| || || ||||| |||||||| || ||| || || Sbjct 62799 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCACTGAAGTGGATTTGCGATGACAACTC 62740 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | ||||||| ||| ||| ||||||| || ||| ||||||||||||||| || Sbjct 62739 ---TACCTTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGG 62683 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||| ||| |||| | |||||||||||||| ||||||||||| || | ||||| Sbjct 62682 CGCCTT-TGCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 62624 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||||||| | ||| || ||||| Sbjct 62623 CCAACGAACTTATCTCTCGCGACGAGGGAATGCACACCGACTTTGC 62578 >seq115 Length=121476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/367 (66%), Gaps = 23/367 (6%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCA 9632 ||||| | || || || |||| |||||| | | | | ||||||||||| || |||| Sbjct 103905 TTCGTACCCGCAATAACCACAA--CCTGTTCCGTGGTGTTGAAACCATCCATTTCAGTCA 103962 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 9692 | ||||| | || ||||||||||||||| | ||| ||| || || Sbjct 103963 GGATCTGGTTGAGCGTGCTTTCCCGTTCATCATTTCC------ACCGCCAAAGTTGTTTT 104016 Query 9693 GC--------TTTCCCAC-GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTT 9742 | ||||||| ||| || || ||||||||||| | |||||| ||| || | | Sbjct 104017 TCGATCTCGATTTCCCAATGGCGTCGATTTCATCAATGAAAATGATGCAAGGTGTGTTCT 104076 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 9802 || | ||| | || ||||| || ||||| | || ||||| |||||||||||| Sbjct 104077 TC-CTCGCGGTGGCGAACAGATCTCGAACACGAGATGGACCGACACCCACAAACATCTCC 104135 Query 9803 ACAAAGTTTGCGGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 9861 || || | | | || ||| | || ||| || ||| |||||| || || | ||| Sbjct 104136 ACGAACTCAGAGCCGCTCACACT-GAAGAATGGAACACCAGATTCGCCAGCTGTTGCTTT 104194 Query 9862 GGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTT 9921 |||||| || ||||| || || || || || | || | |||||| || |||||||| Sbjct 104195 GGCGAGCAGCGTCTTGCCAGTTCCAGGAGGCCCAGAAAGAATGGCACCGCGAGGAATCTT 104254 Query 9922 GGCGCCA 9928 || ||| Sbjct 104255 CGCACCA 104261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253217609600