Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq597 165 9e-36 seq110 91.5 2e-13 >seq597 Length=589508 Score = 165 bits (182), Expect = 9e-36 Identities = 400/598 (67%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACA 19171 ||||||| || || |||||||| || || || ||| | || || || | ||| Sbjct 282007 TCATGCGTGTGGCAGTCGGCATTCACGGAGAGGACATT----GAATCTGCTATTCAGACG 282062 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| || ||| | || | |||||||||||| | || || ||||||||||| || Sbjct 282063 TACAACTACATGTCTAACAAATACTTCACGCACGCCTCCCCCACACTTTTCAACGCAGGC 282122 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || | ||||| | ||| || ||||| | | | |||||| ||||| || ||| Sbjct 282123 ACACCTCAACCGCAACTCTCGTCTTGCTTCCTCATTGACACGAAGGAGGACAGTATCGAG 282182 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || |||||||| || |||||| || || || || ||| | || |||||||| Sbjct 282183 GGTATCTACGACACCCTCAAGACTTGTGCTATGATTTCAAAGACCGCTGGTGGTATCGGC 282242 Query 19352 ATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 | || | | ||| || ||| | | ||| || || || || ||||| | Sbjct 282243 CTTAACATACATCGCAT--CCGAGCCACTGGATCATACATTGGAGGAACAAACGGCACAT 282300 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 | ||||| | || || |||||||| ||||| || || || | ||||| | || | Sbjct 282301 CGAACGGTCTTGTTCCTATGCTCCGTGTCTTTGACGCGACTGCTCGCTACGTTGATCAAG 282360 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| ||| || || | ||||||||||||||||||||||||||||| || ||| Sbjct 282361 GTGGCAACAAGCGTCCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACGCCGATGTCT 282420 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC-TG-TCGCGACCT 19587 | | | | || ||| | |||||| || | || ||| |||| || ||| || || Sbjct 282421 TCAACTGGTTAGATCTGAGAAAGAACCACGGCAA--AGAAGAAGCGCGTGCTCGTGATCT 282478 Query 19588 CTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647 ||| |||||||||||||| ||||| |||||| || || || || | | || || Sbjct 282479 TTTCTATGCCTTGTGGATTCCCGACCTGTTCATGAAGCGCGTCGAACAGAATGGCGACTG 282538 Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 | || |||||||| ||||| |||||||| || |||| ||||||| || | |||| Sbjct 282539 GACTCTCATGTGCCCTCACGAGTGCCCTGGTCTTGCCGATATCTACGGTGACGAGTTC 282596 Score = 159 bits (176), Expect = 4e-34 Identities = 903/1432 (63%), Gaps = 93/1432 (6%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||| || | |||||| |||||||| ||||||| || | || || | || || Sbjct 283422 GTAGATATTTGACGTGTATGGCTCGAAGCACTCGTTGAAACCGAGAATTTGAGATGTGGA 283363 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| || || || || || || || |||| ||| ||| ||||||| || | Sbjct 283362 AGCAGTTGGCATAGGAGCAACAAGAAGTGAGTTGCGAATACCGTGCTTCTTGATATCAGC 283303 Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || | |||||| | || | | | || ||||||||| || || Sbjct 283302 CTTGAGCGAGTCCCAGTCCCAGAGATCCGTAGGAGTGACGTTCCACATGTCGTACTGGAG 283243 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG-GCGA 78766 ||||||| ||| | || || |||| | | || | ||| | | ||| || |||| || | Sbjct 283242 AATACCCTGGGAAACTGGAGAGCCCTCGTAGGTTTTGTATG-TGCCTTCTTCTTGTGCAA 283184 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 | | ||| || | || ||| || ||||| | | ||||||||| |||| |||| Sbjct 283183 GCTTGCAGGAAGAGGTCAAGGCGGCATGGTAAATGGTCTCGAAGATTTGAATGTTAAGCT 283124 Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCC--GAGCATCATGAAGACATCGGCCAGGCC 78884 |||| || ||||| | |||| ||||| | ||| |||| || || || Sbjct 283123 TCTTTGCCTCGGGAGACTCGAAGGGCAGGCGAAGAGCA--AGGAAAGCATCCGCAAGACC 283066 Query 78885 CTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-- 78942 ||| || || | | ||| || ||||| || |||||| || | || |||| Sbjct 283065 CTGTACACCAACACCGACGGGACGGTGACGGGAGTTGCTGTT---GTATGCTTCGGGAAC 283009 Query 78943 -GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTC 79001 ||||| ||| || |||| ||||| ||| || |||| | || || Sbjct 283008 GGGGTAGTGGTTGACGTCAATGATCTTGTTCAAGTTGCGAATGACAGTTTGGACGACTTC 282949 Query 79002 GTACAATTTGGCGAAATCAAAATGATTTC-CTTTGA---TGAAAGTCGGTAGGCACAGC- 79056 || ||| ||| ||||||| | || | | |||| | || | ||| |||| ||| Sbjct 282948 GTGCAACTTGTTGAAATCATA--GACGCCGCGTTGAACGTCAACGAAGGTTGGCAAAGCC 282891 Query 79057 ---GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 ||||||| |||||| || || ||| || || ||| ||| ||||| || ||| Sbjct 282890 ATGGATGCCAAGTTGCAAACAGCGACCTCATCAGGCGCAGAGTACTCAATGATCTCAGTG 282831 Query 79114 CACAAATTAGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGC 79172 |||| ||| || | || ||||| || | ||||||||| |||||||| ||| || || Sbjct 282830 CACAGATTGGAGCTACGA-ATGGTTCCCAAGTTCTTCTGATTGCTCTTGCGGTTGCAAGC 282772 Query 79173 GTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCCC 79231 || ||||| |||| | || | || ||||| ||| ||||| ||| | ||| || Sbjct 282771 ATCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCGGTCTGGG-CTTGAAGAATGGCGTACC 282713 Query 79232 AGATGTCCCGGGCCCGGACAA--------------CCTTCTT----GTACC---GACCCT 79270 ||| | |||| |||| | ||||||| ||||| || | Sbjct 282712 AGAGCTTTTGGGCGCGGATAGTTTCACGGCCACGGCCTTCTTTCTCGTACCTGGGAGCGG 282653 Query 79271 GT-------GCG------ACGTACGTCCGG------TACAACTCGTTGAAAGCCTCC--- 79308 | ||| | | || || || ||| ||||| || ||| || Sbjct 282652 TTAGTATTGGCGGTAGTCAAGCACTTCGGGGCAACTTACTTCTCGTAGAGAGCTTCGAAC 282593 Query 79309 ------CCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCC 79362 || |||| ||||| || || ||||||||||| |||||||| || |||||| Sbjct 282592 TCGTCACCGTAGATATCGGCAAGACCAGGGCACTCGTGAGGGCACATGAGAGTCCAGTCG 282533 Query 79363 TCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCG 79422 | | || || || || |||||| ||||| || ||||||| ||| ||| || || Sbjct 282532 CCATTCTGTTCGACGCGCTTCATGAACAGGTCGGGAATCCACAAGGCATAGAAAAGATCA 282473 Query 79423 CGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCG 79482 || |||| || || | ||| |||||| | ||| || | ||| | || ||| Sbjct 282472 CGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTCTCAGATCTAACCAGTTGAAGACATCG 282413 Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTG 79542 |||||||| ||||| || ||||||||||| | ||| |||||| ||| || || | Sbjct 282412 GCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGACGCTTGTTGCCACCTTGATCA 282353 Query 79543 ACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCG 79602 ||||| || || || || || || |||||||| || || | |||| | |||| Sbjct 282352 ACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCATAGGAACAAGACCGTTCGATGTGCCG 282293 Query 79603 TTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTCCGATGC 79660 || || || || || || | || || ||| ||| | | || | ||||| | Sbjct 282292 TTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATG--CGATGTATGTTAAGGCCGATAC 282235 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | ||| || || || || |||||| || |||||||| |||||||| Sbjct 282234 CACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGAGGGTGTCGTAGATACCCTCGATAC 282175 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 ||| |||||| | | | |||||||| ||| | || || | || || |||| Sbjct 282174 TGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGAGTTGCGGTTGAGGTGTGCCTGCGT 282115 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCT 79840 |||| || || || | |||||||||||| | || | ||| | ||||||| Sbjct 282114 TGAAAAGTGTGGGGGAGGCGTGCGTGAAGTATTTGTTAGACATGTAGTTGTACGTC---- 282059 Query 79841 TGACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||| || | | ||| || ||||| |||||||| || || ||||||| Sbjct 282058 TGAATAGCAGATTCAATGTCCTCTCCGTGAATGCCGACTGCCACACGCATGA 282007 >seq110 Length=125662 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||||| |||||| | || || ||| || || || ||||||||| ||| | || Sbjct 62735 TTTGCATCGCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTT 62676 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| ||||||||||| ||||| || |||||||| ||| ||| ||||||||||| Sbjct 62675 GCATCTATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAA 62616 Query 60093 CTGATTTCCCGGGACGAGGG 60112 || || || || |||||||| Sbjct 62615 CTTATCTCTCGCGACGAGGG 62596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517669177600