Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq264 158 1e-33 seq520 136 5e-27 seq265 98.7 1e-15 >seq264 Length=644297 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || | |||||||||||| Sbjct 590994 ATGCAGATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 590935 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| || || ||||||||| Sbjct 590934 GACACTATCGACAATGTTAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 590875 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||| || |||| || ||| | | ||||| || Sbjct 590874 CAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGATGGCCGCACCTTGTCCGACTACAAC 590815 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||||||||| || | ||| | ||||| |||||||| Sbjct 590814 ATCCAGAAGGAATCCACTCTCCACTTGGTCCTACGTCTCCGCGGTGG 590768 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||||||||| | || | ||| | || | ||| | Sbjct 591198 ACCGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACGTCAAGACC 591139 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||||||||| || |||||||||||||| | || || || || ||| Sbjct 591138 AAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 591079 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| ||||||| || |||| ||||| ||||| || || Sbjct 591078 CAGCTCGAGGATGGCCGAACCCTCTCAGACTACAACATCCAGAAGGAGTCCACACTCCAC 591019 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 591018 CTCGTCCTCCGCCTCCGTGGTGG 590996 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||||||||||||||| || || ||||| || | Sbjct 590766 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTCGAAGTTGAATCCTCT 590707 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || ||||||||||| || ||||||||||| ||| Sbjct 590706 GACACCATCGACAACGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAG 590647 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || ||||| | || |||| ||||| | ||| ||||| || Sbjct 590646 CAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGTTGAGC-GACTACAA 590588 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || | |||||||| || || Sbjct 590587 CATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGG 590540 >seq520 Length=276588 Score = 136 bits (150), Expect = 5e-27 Identities = 141/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || ||||| || || || |||||||| || || |||||||| ||||| ||| | || Sbjct 100573 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 100514 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || || ||||||||||||||||| |||||||| ||||| || Sbjct 100513 GACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTA 100454 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || |||||||| |||||| | ||||||| |||||| | ||| ||||| || ||||||| Sbjct 100453 ATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGC-GACTACAACATCCAAAA 100395 Query 27594 GG 27595 || Sbjct 100394 GG 100393 >seq265 Length=369171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| ||||| || |||||||||||||| | || || || || ||||| ||||| Sbjct 48871 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 48812 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || |||||| | ||||| || |||| ||||| || || || || || ||| | Sbjct 48811 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTCCTC 48752 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 48751 CGACTCCGTGGTGG 48738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570302985964800