Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq264 170 4e-37 seq520 131 4e-25 seq265 120 7e-22 >seq264 Length=644297 Score = 170 bits (188), Expect = 4e-37 Identities = 173/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| | || ||||| || |||||||| || || | ||| | Sbjct 590545 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACG- 590603 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||||||||| |||||| || |||||||| ||||| || || || ||||||| | Sbjct 590604 TACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGAGGAATAC 590663 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||||||||||||| || ||||| ||||||||||||||| |||||| |||| Sbjct 590664 CTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCGA 590723 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || ||||| ||||| || || | ||||| Sbjct 590724 GTGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 590766 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | ||| |||||||| || || |||||||| || || | | ||| Sbjct 590774 CGGAGACGTAGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTG 590833 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || |||||||| |||||||| | ||| || ||||| || || | || Sbjct 590834 CGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCC 590893 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || || || ||||| ||||| || |||||||| | Sbjct 590894 TCCTTGTCCTGGATCTTGGTCTTAACATTGTCGATAGTGTCTGATGACTCAACCTCCAAG 590953 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | |||||| || || | |||||| Sbjct 590954 GTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 590994 Score = 147 bits (162), Expect = 5e-30 Identities = 148/191 (77%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||| Sbjct 591011 AGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCC 591070 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | ||| |||||||| Sbjct 591071 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 591130 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || ||||| ||||||||||| ||| |||||||| || |||||| Sbjct 591131 TGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGA---CTCAACCTCAAGGGTGATC 591187 Query 211080 GTCTTTCCCGT 211090 |||||||| || Sbjct 591188 GTCTTTCCGGT 591198 >seq520 Length=276588 Score = 131 bits (144), Expect = 4e-25 Identities = 149/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCT 210969 ||||| ||| | | | ||||||||||| || || | ||| ||| | |||||| |||| | Sbjct 100380 GTGAAAAGTCG-CACCTTTTGGATGTTGTAGTCGCTCAA-GGTACGTCCATCCTCCAATT 100437 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || |||||||| || |||| ||| |||||||| ||||||| Sbjct 100438 GCTTTCCAGCAAAGATTAATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCT 100497 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || || || ||||| ||||||||| || ||||| || ||||| ||||| |||| Sbjct 100498 TGGTCTTGACATTGTCGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 100557 Query 211090 TGAGAGTCTTTACAAA 211105 |||| || || || || Sbjct 100558 TGAGGGTTTTGACGAA 100573 >seq265 Length=369171 Score = 120 bits (132), Expect = 7e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| ||||| || || ||||| || |||||||| || |||| ||||| Sbjct 48743 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGT 48802 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||||||||| |||||||| | ||| || ||||| || || | ||| Sbjct 48803 GCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 48862 Query 211013 TTCCTTGTC 211021 ||||||||| Sbjct 48863 TTCCTTGTC 48871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136554299600