Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148275.1_202017-05-17] 1,040 sequences; 62,487,368 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq264 167 6e-36 seq520 129 1e-24 seq265 91.5 4e-13 >seq264 Length=644297 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||||||||| || |||| ||||| |||| ||| || | |||||| Sbjct 590783 AGGACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 590842 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | || || ||||| || || ||||| |||||||| Sbjct 590843 TCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 590902 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| |||||||| | || || || || ||||| ||| Sbjct 590903 TGGATCTTGGTCTTAACATTGTCGATAGTGTCTGATGACTCAACCTCCAAGGTGATGGTC 590962 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| | ||||| Sbjct 590963 TTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 590994 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| ||| ||| || Sbjct 590545 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT 590604 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || |||||||| || || || || || || |||||||| Sbjct 590605 ACGTCCATCTTCCAACTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGAGGAATACC 590664 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||||||||||| |||| ||| || || | Sbjct 590665 TTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCGAG 590724 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | || || | ||| | |||||| Sbjct 590725 TGTAATAGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 590766 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| || | | |||| ||||| Sbjct 591011 AGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCC 591070 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || || || || ||||||||| Sbjct 591071 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 591130 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| | || || || | ||||||||| Sbjct 591131 TGAATCTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTC 591190 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 591191 TTTCCGGTCA 591200 >seq520 Length=276588 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| ||| ||| || | ||||| || | ||||| ||||| ||||| Sbjct 100395 TTTTGGATGTTGTAGTCGCTCAAGGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATT 100454 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| |||||||| || ||||||||||||||||| ||| ||| ||| Sbjct 100455 AATCGCTGTTGGTCTGGCGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG 100514 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||| | ||||| | ||| Sbjct 100515 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTGACGAA 100573 >seq265 Length=369171 Score = 91.5 bits (100), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| |||||||| || || || || |||| ||||| || | | || Sbjct 48743 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAGGGT 48802 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| | || || ||||| || || || || Sbjct 48803 GCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 48862 Query 225612 TTCCTTGTCT 225621 |||||||||| Sbjct 48863 TTCCTTGTCT 48872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192515309521760