Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1169 152 5e-32 seq1579 113 5e-20 seq1455 93.3 4e-14 seq537 87.8 2e-12 >seq1169 Length=73998 Score = 152 bits (168), Expect = 5e-32 Identities = 204/283 (72%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||||||||||||| ||||| ||| || || ||||||| ||| ||| | || || Sbjct 49451 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 49392 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| |||||| | ||| |||||||| |||| ||| ||||||| Sbjct 49391 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 49332 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || |||||||| || || ||||||||||||||||| || |||| ||| Sbjct 49331 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACGT 49272 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | || || ||||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 49271 TTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCATG 49212 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915 || ||| | || || || | || || ||| ||||| |||| Sbjct 49211 GAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 49169 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 ||| || || || ||||| || |||||||| ||||||| ||| || || | || Sbjct 48995 GCGTCTCGTCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTAT 48936 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 || ||||||||||| ||||| |||||||||||| |||| ||| |||||| || ||||| Sbjct 48935 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTC 48876 Query 117157 CAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||||||| |||| |||||||||||| Sbjct 48875 TCGCGACGAGGGAATGCACACCGACTTTGCCTG 48843 >seq1579 Length=49950 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || | || || ||| || | Sbjct 29238 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCT 29179 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| || || || || | ||||| Sbjct 29178 GACACCATCGACAACG-TCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCA 29120 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||| |||| || | || || || | ||||||||| Sbjct 29119 GCAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACGCTGAGCGACTACAA 29060 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 29059 CATCCAGAAGGAGTCGACCTTGCA 29036 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| ||||||||| | || || || | | Sbjct 29466 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 29407 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 29406 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 29347 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| || || || || | |||||| | |||||||||| Sbjct 29346 CAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAAC 29287 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||| || || Sbjct 29286 ATCCAGAAGGAATCCACTCTCCA 29264 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || || || | | ||||| | | | |||| ||||| Sbjct 29670 ACAGGAAAGACGATCACCCTTGAGGTTGAGTCTAGCGACACCATCGACAACG-TCAAGAC 29612 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||| ||||| | |||||||| || | |||| ||| ||||| Sbjct 29611 CAAGATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAGCGCTTGATCTTCGCCGGCAA 29552 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | || |||||| |||||||||||||||||||||| |||| || || Sbjct 29551 GCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACACTTCA 29492 Query 40893 TCTAGT 40898 || || Sbjct 29491 CCTTGT 29486 >seq1455 Length=38904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| ||||| ||||||||||| ||||||||| | || ||||| || | |||| | Sbjct 28711 TTCGTCAAAACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 28652 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || | ||||| || ||| | Sbjct 28651 GACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCGCCAGACCAACAGCGATTA 28592 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || || |||| || | || ||| | | ||||||||||||||| ||| Sbjct 28591 ATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACCTTGAGCGACTACAACATCCAAAAG 28532 Query 40879 G 40879 | Sbjct 28531 G 28531 >seq537 Length=52655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || |||||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 29465 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 29406 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||| ||||||||||||||||||||| | || || || || || Sbjct 29405 GATGGACGCACCCTATCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 29350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208380396800