Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1579 129 5e-25 >seq1579 Length=49950 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||||||| || ||| | || || Sbjct 29258 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 29317 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| ||||| ||||| ||||| || || | ||||||||||||| Sbjct 29318 AGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 29377 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||||| ||| || |||||| Sbjct 29378 ATCTTGGTCTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAAGGTGATGGTCTTG 29437 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||| || ||||||||||| Sbjct 29438 CCCGTCAAAGTCTTGACGAAGATTTGCAT 29466 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| |||| || | || ||| Sbjct 29030 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGTCCATCTTCC 29089 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||||||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 29090 AACTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 29149 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || || || | ||||| |||||| Sbjct 29150 ATCTTCGTCTTGACGTTGTCGATGGTGTCAGAGGATTCAACTTCTAGTGTAATAGTCTTG 29209 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||||||||| Sbjct 29210 CCGGTGAGGGTCTTCACGAAGATTTGCAT 29238 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAG 45189 ||| || ||| ||||||||| |||||||||||| || | ||| ||| ||| || Sbjct 29491 GTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AG 29547 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || || |||||||| ||||| ||||| ||||| || || | ||||||||||| ||| Sbjct 29548 CTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAAT 29607 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | |||| | | ||| ||||| | ||| |||||||| || Sbjct 29608 CTTGGTCTTGACGTTGTCGATGGTGTCGCTAGACTCAACCTCAAGGGTGATCGTCTTTCC 29667 Query 45310 CGTCA 45314 |||| Sbjct 29668 TGTCA 29672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067110835280