Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31] 1,680 sequences; 40,142,277 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq196 253 2e-62 seq1169 122 8e-23 seq1579 111 1e-19 >seq196 Length=40614 Score = 253 bits (280), Expect = 2e-62 Identities = 634/951 (67%), Gaps = 18/951 (2%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 ||||| | ||| | || || || ||| ||||||| ||||| || || || | | Sbjct 19671 TACTTCTCGTAGAGAGCTTCGAACTCGTCACCGTAGATATCGGCAAGACCAGGGCACTCG 19612 Query 23309 ATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 || ||||||||| |||| | | | || | ||| ||||| |||| || || || | Sbjct 19611 TGAGGGCACATGAGAGTCCAG-TCGCCATTC-TGTTCGACGCGCTTCATGAACAGGTCGG 19554 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | ||||| | || ||||| || || || || ||| | || ||||||||| ||||||| Sbjct 19553 GAATCCACAAGGCATAGAAAAGATCACGAGCACGCGCTTCTTCTTTGCCGTGGTTCTTTC 19494 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 ||| ||| || ||| || || || || ||||| ||||||||||| | ||| || || | Sbjct 19493 TCAGATCTAACCAGTTGAAGACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAATGCAC 19434 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 | || | ||| ||||| || ||||| ||||| || || || || | || | |||| Sbjct 19433 CAGGACGCTTGTTGCCACCTTGATCAACGTAGCGAGCAGTCGCGTCAAAGACACGGAGCA 19374 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 | || || |||||||| || | |||| | || | | || || | ||||| | Sbjct 19373 TAGGAACAAGACCGTTCGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGA 19314 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 | || | || | || || || || | | || || ||||| || || || | Sbjct 19313 TGCGATGTATGTTAAGGCCGATACCACCAGCGGTCTTTGAAATCATAGCACAAGTCTTGA 19254 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 | ||||||||||| ||||||||||||||||| || || | | | ||| || || || | Sbjct 19253 GGGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCGTGTCAATGAGGAAGCAAGACGAGA 19194 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 ||||| || || || | || ||| ||||| ||| ||||||||| |||||| | Sbjct 19193 GTTGCGGTTGAGGTGTGCCTGCGTTGAAAAGTGTAGGGGAGGCGTGCGTGAAGTATTTGT 19134 Query 23787 TCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATG 23845 | ||||| ||| ||||| || | ||||| | ||||||||||||||||| || |||| Sbjct 19133 TAGACATGTAG-TTGTATGTCTGTATGGCAGATTCAATGTCCTCTCCGTGAATGCCGACT 19075 Query 23846 GCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAAC 23902 || || ||||| ||||| | ||| || | || ||||| | |||| | ||| || Sbjct 19074 GCCACACGCATGATCATATGTTGTGGACGCTCAGCGACCTT---GCCGCTTATTCGGAGT 19018 Query 23903 AGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGC 23962 || ||||| || | || || || || ||||| || | || || || || | |||| Sbjct 19017 AGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCTGTCGTAT 18958 Query 23963 ACTATGGCCGAATTCAAACGGTACGCATTGGCAGC--GATGATGTTGTAATGAAAATTCG 24020 || ||||| || ||||| | ||||| || | || | | ||||| | | || Sbjct 18957 ACAATGGCAGAGTTCAACTCATCCGCAT--GCTTCATGACGGTCTTGTATGTGATGTCCG 18900 Query 24021 ATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATAATGA 24080 | ||||| || ||| | | ||||||| | ||| || || | || |||| Sbjct 18899 AAATCATAGGGCATTTCTTGTTGTTCTTTGGGTTGATATAATCGTAGAGGTCTTGGATGA 18840 Query 24081 CATC-GAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCA 24139 || | || || | || || || | |||||| | ||| || ||||| | | || ||| Sbjct 18839 CAGCAGAGAACTGCTTC-TTGGTTTGCTTGTGAAGATTCGATACGGCGATACGTGCTGCA 18781 Query 24140 AGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCG 24190 || | | ||||||| ||| || ||||||| |||||| ||||| ||| Sbjct 18780 AGGATTGCGTAGTCGGGATGTGTGACGGTCATGTACGCTGCTGTCTCAGCG 18730 >seq1169 Length=73998 Score = 122 bits (134), Expect = 8e-23 Identities = 282/420 (67%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| || ||||| ||||| ||||| ||| |||||| | || || ||| Sbjct 48987 TCGCATTCGCAGCTGTCGAGGGTATCTTCTTCAGCGGCGCCTTTGCATCTATCTTCTGGC 48928 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| ||||| || ||||||||| |||| || |||||| | || || ||||||| Sbjct 48927 TCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAACTTATCTCTCGCGACG 48868 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| | || || || ||||| ||||| | | ||| || | ||| || || ||| Sbjct 48867 AGGGAATGCACACCGACTTTGCCTGCCTCCTCTTCTCACAGCTCAACAAGAAGCCTTCGC 48808 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 || | || | ||| ||||||||||| || || || | || || | | || Sbjct 48807 CTGAAGCCGTCCGCGCCATCATCACCGAGGCAGTACAAATTGAGCAGGAATTCTTGAGCG 48748 Query 58219 AAGCCCTACCGGTGGCCA-TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 |||| |||| ||| | ||||||| |||||| | | |||| ||||||| ||| Sbjct 48747 AAGCATTACC-GTGCAGATTGCTCGGCATGAACTCTACCCTCATGTGCCAGTACATCGAG 48689 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAA 58333 |||||||| || | || ||||| | | |||| | |||| ||||||| | Sbjct 48688 TTTGTTGCTGATCGTCTCTTGCTTG---CGCTTGG-CAATGTCAAGGTTTACAACGCCGT 48633 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || || ||| | || || || | || ||||| ||||||||||| || Sbjct 48632 CAACCCCTTCGACTTCATGGAGAACATATCTCTTGCCGGAAAGACTAACTTTTTCGAGAA 48573 Score = 107 bits (118), Expect = 2e-18 Identities = 196/284 (69%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| ||||||||| |||||| || || |||||||||| |||||| | || || Sbjct 49451 ATCTGGCGCATGTACAAGAAGGCAATGGCCTCATTTTGGACCGCCGAAGAGATCGATCTC 49392 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || | || ||| | || | || || || | ||| || | Sbjct 49391 TCCAAAGACGTTCCAGACTGGAACAACCGCCTGAACGACGACGAACGCTTTTTCATCTCA 49332 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || |||||||| ||||| ||||| || || |||||||| | ||||| | Sbjct 49331 CACATTCTCGCATTTTTCGCAGCATCGGATGGCATCGTCAACGAGAACCTCCTCGAACG- 49273 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| ||| ||||| || || | || || ||||||||||||| |||||| | ||||| Sbjct 49272 TTTTAGCAACGAAGTTCAGGTTCCAGAAGCCCGATGCTTTTACGGTTTTCAAATCGCCAT 49213 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGT 57849 |||||| | ||||| || | || || || || ||||| |||| Sbjct 49212 GGAAAACATCCATTCCGAGACATACTCCCTCCTGATCGAGACGT 49169 >seq1579 Length=49950 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || || || | || |||||| | || Sbjct 29238 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACTATTACACTAGAAGTTGAATCCTCT 29179 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 29178 GACACCATCGACAACGTCAAGACGAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 29119 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || ||||| || || ||||||||||| | | | || ||||||| || || Sbjct 29118 CAGCGCCTCATCTTCGCCGGAAAGCAGTTGGAAGA-TGGACGTACGCTGAGCGACTACAA 29060 Query 31372 CATTCAAAAAGAATCGAC 31389 ||| || || || ||||| Sbjct 29059 CATCCAGAAGGAGTCGAC 29042 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| ||||| || |||||| | || ||||| | || Sbjct 29466 ATGCAAATCTTCGTCAAGACTTTGACGGGCAAGACCATCACCTTGGAGGTTGAGTCATCA 29407 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | || || ||||| Sbjct 29406 GACACCATCGACAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGTATCCCACCAGACCA 29348 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| || | ||||| || || ||| || || Sbjct 29347 GCAGCGCTTGATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAA 29288 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| ||||| || |||| || Sbjct 29287 CATCCAGAAGGAATCCACTCTCCACTTGGTTCT 29255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757038905600